Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0562 ATGGATTTTGTGAGCCCAATCTTGGATGTGGTGTCTCGCTTGTATGCCTGCACCGCTAAGCATGCTGGCTACATCTTTCATGTCAAACTAGATCTTGAATCCTTGAGAAGCAGAATGGTAGAACTGAAGGATCTAAGTGAAGATGTTAAGGCCAGAGTTGAACTTGCAGTGCAACAAAATATGAAGGTCAGAAGGGAAGTGAAAAGGTGGCTCGAGGACATCGATTTCATAGAGGTTGATGCGGCCCGAATTCTGCAACAAGGGGATCTGCAAGTAGAGAAGAAATGCCTTGGAAGCTGTTGTCCCAAGAATTTTTGGTCAACCTACAAGGTTGGGAAGAGAGTATCCAAACAACTCATAACTATTGTGATTCTCCTGGGCGAGGGAAGAAGTTTTGATTCTGTGGCTTACAGGTTGCCATGTGTTCGTGTAGATGAAATGCCTCTTGGGCATACCGTGGGCGTAGATTGGTTGTATGAGAAGGTTTGCAGCTGTCTCATTGAAGATAAAGTGGGAGTTATTGGATTATATGGAACAGGGGGTGTTGGGAAAACAACGCTAATGAAGAAAATCAACAATGAGTTCCTCAAAACAAAGCACCAATTTGGTGTTGTGATTTGGGTCTCCGTGTCCAAGCAAGCAAGTGTGAGAACTACTCAAGAGGTGATTCGAAATAAATTACAGATCCCGGATGGCATGTGGCAAGGTAGAACAGAGGATGAAAGGGCTAGAGAAATATTCAACATCCTGAAAACAAAAAGGTTTGTGCTACTTTTAGACGATGTATGGCAACGACTTGATCTCTCAGAAATAGGAGTTCCCCCTCTTCCAGATGATCAACGTAAGTCCAAAGTAATTATCACGACTCGATTCATGAGGATATGCAGTGACATGGAAGTTCAAGCGACATTTAAAGTGAACTGTTTGACAAGGGAAGAAGCCTTGACTCTGTTCCTGAAGAAGGTCGGAGAGGACACTCTAAGCTCTCATCCTGATATTCCAAATCTTGCTAAGATGATGGCAGAGCGGTGCAAAGGCTTGCCACTTGCCCTCGTTACTGTTGGACGAGCAATGGCTAACAGGATTACTCCCCAGGAATGGGAACAGGCAATACAAGAGCTGGAGAAATTTCCATCGGAAATTTCAGGTATGGAGGATCGATTGTTTAATGTTTTGAAGCTAAGTTATGATAGCTTAAGGGATGATATCACCAAATCTTGTTTCGTATATTTCTCTGTATTTCCCAAGGAATATGAAATTAGGAATGATGAGCTTATAGAACATTGGATTGGGGAACGGTTTTTTGATGATTTGGACATATGTGAAGCACGCAGACGAGGACATAAAATTATCGAAGAACTGAAGAATGCAAGCCTGCTAGAAGAGAGAGATGGATTTAAAGAGTCTATCAAGATTCATGACGTGATCCACGACATGGCTCTATGGATAGGTCATGAATGTGAGACGAGGATGAATAAAATTTTGGTATGTGAATCTGTGGGGTTTGTTGAAGCTAGGAGAGCAGCCAACTGGAATGAGGCAGAAAGGATATCATTGTGGGGTAGGAATATTGAACAACTCCCTGAAACACCACATTGCTCCAAGCTTCTGACTCTCTTTGTGAGAGAATGTACTGAGTTGAAGACATTTCCAAGTGGATTCTTCCAATTCATGCCCCTCATAAGAGTGCTAAACTTGTCAGCTACCCATAGATTAACTGAGTTTCCTGTTGGTGTTGAGAGGTTAATCAACTTGGAATATCTTAATCTTTCAATGACACGCATAAAACAGTTATCAACTGAGATTAGGAATTTGGCAAAACTGAGGTGTTTGCTACTTGATAGCATGCACTCACTTATTCCACCAAATGTGATATCAAGTCTTCTCTCGTTACGGTTATTTAGTATGTATGATGGAAATGCTTTATCTACATATCGTCAAGCTTTGTTGGAGGAGTTGGAGTCCATAGAACGTTTGGATGAGTTATCTCTCTCGTTCCGTAGTATTATAGCTCTCAATAGATTACTGAGCTCCTACAAGTTACAGAGGTGCATGAAACGTTTAAGCCTCAATGACTGCGAGAATTTGTTGTCGCTTGAGCTATCATCAGTGTCTTTGTGCTATTTGGAGACTCTTGTTATATTCAACTGTCTTCAATTGGAAGATGTGAAAATTAATGTGGAAAAAGAGGGAAGGAAAGGATTTGATGAAAGAACTTATGATATCCCCAATCCTGACTTGATAGTGAGAAACAAACAATACTTCGGCCGGCTTCGTGATGTAAAGATTTGGAGTTGTCCAAAACTGTTGAACTTGACATGGCTTATTTATGCTGCAGGCCTTGAGTCACTTAGCATTCAGTCCTGTGTATCGATGAAAGAAGTGATAAGTTACGAGTACGGAGCTTCGACTACACAACACGTGAGATTGTTCACGAGGCTCACAACTCTAGTATTGGGTGGCATGCCACTGCTAGAGAGCATCTATCAGGGGACCCTACTCTTCCCCGCATTGGAAGTAATCTCTGTGATCAACTGTCCGAAGCTAGGGAGGCTCCCGTTTGGCGCCAATAGTGCTGCCAAGAGCTTAAAGAAAATTGAAGGAGATACAACCTGGTGGTATGGGTTGCAATGGGAGGATGAGACCATTGAGCTAACTTTCACCAAATATTTTTCCCCAGAGTACTTGGCCGATGCAATCCATGTCTCAGAGGATATGAAAGATGTGCACCTGTCCCTTCTTACTGAAAGGTTCGACTTCATGGCAAAGAAAAAAAAGGTGGGAAAAGGGTCAGCCTCGACGTCAGGGACCTAA 2814 0.4243 MDFVSPILDVVSRLYACTAKHAGYIFHVKLDLESLRSRMVELKDLSEDVKARVELAVQQNMKVRREVKRWLEDIDFIEVDAARILQQGDLQVEKKCLGSCCPKNFWSTYKVGKRVSKQLITIVILLGEGRSFDSVAYRLPCVRVDEMPLGHTVGVDWLYEKVCSCLIEDKVGVIGLYGTGGVGKTTLMKKINNEFLKTKHQFGVVIWVSVSKQASVRTTQEVIRNKLQIPDGMWQGRTEDERAREIFNILKTKRFVLLLDDVWQRLDLSEIGVPPLPDDQRKSKVIITTRFMRICSDMEVQATFKVNCLTREEALTLFLKKVGEDTLSSHPDIPNLAKMMAERCKGLPLALVTVGRAMANRITPQEWEQAIQELEKFPSEISGMEDRLFNVLKLSYDSLRDDITKSCFVYFSVFPKEYEIRNDELIEHWIGERFFDDLDICEARRRGHKIIEELKNASLLEERDGFKESIKIHDVIHDMALWIGHECETRMNKILVCESVGFVEARRAANWNEAERISLWGRNIEQLPETPHCSKLLTLFVRECTELKTFPSGFFQFMPLIRVLNLSATHRLTEFPVGVERLINLEYLNLSMTRIKQLSTEIRNLAKLRCLLLDSMHSLIPPNVISSLLSLRLFSMYDGNALSTYRQALLEELESIERLDELSLSFRSIIALNRLLSSYKLQRCMKRLSLNDCENLLSLELSSVSLCYLETLVIFNCLQLEDVKINVEKEGRKGFDERTYDIPNPDLIVRNKQYFGRLRDVKIWSCPKLLNLTWLIYAAGLESLSIQSCVSMKEVISYEYGASTTQHVRLFTRLTTLVLGGMPLLESIYQGTLLFPALEVISVINCPKLGRLPFGANSAAKSLKKIEGDTTWWYGLQWEDETIELTFTKYFSPEYLADAIHVSEDMKDVHLSLLTERFDFMAKKKKVGKGSASTSGT* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0562 937 FunFam Probable disease resistance protein At1g63360 396 482 - -
Vvi9g0562 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 410 IPR027417 -
Vvi9g0562 937 FunFam Probable disease resistance protein At5g66910 308 395 - -
Vvi9g0562 937 SUPERFAMILY L domain-like 471 858 - -
Vvi9g0562 937 Coils Coil 32 52 - -
Vvi9g0562 937 PRINTS Disease resistance protein signature 344 358 - -
Vvi9g0562 937 PRINTS Disease resistance protein signature 249 263 - -
Vvi9g0562 937 PRINTS Disease resistance protein signature 173 188 - -
Vvi9g0562 937 PRINTS Disease resistance protein signature 603 619 - -
Vvi9g0562 937 SMART AAA_5 170 307 IPR003593 GO:0016887
Vvi9g0562 937 FunFam Probable disease resistance protein At1g61300 135 303 - -
Vvi9g0562 937 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 27 853 - -
Vvi9g0562 937 Gene3D - 308 400 IPR042197 -
Vvi9g0562 937 Gene3D Ribonuclease Inhibitor 484 730 IPR032675 -
Vvi9g0562 937 Gene3D - 401 481 IPR036388 -
Vvi9g0562 937 Gene3D - 143 306 IPR027417 -
Vvi9g0562 937 Gene3D Ribonuclease Inhibitor 748 867 IPR032675 -
Vvi9g0562 937 Pfam NB-ARC domain 160 397 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0562 Vvi-Chr9 5642255 5645259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0562 174 493 WRKY Transcription Factor Family AT5G45050 23.364 3.03e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0562 - K13459 vvi:100241155 1744.94