Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0557 ATGGATAGTAAGAAAGTGGGGTGTTCAAAATTAGGGTCTTCAAAACTAGGGAGTCATCTTGTATTGCATGGACATTCACGACCCATTGTCAACTTGTTTTATAGTCCTGTCACTCCAGATGGATTCTTCCTGATCAGTTCCAGCAAGGATTCTACTCCAATGCTGAGGAATGGGGAGACTGGGGATTGGATTGGAACCTTTGAAGGACATAAAGGTGCTGTTTGGAGTTGCAGCCTAGATACTAATGCTTTACGTGCTGCATCTGGCTCTGCAGATTTTACTGCGAAATTGTGGGATGCATTGACTGGGGACGAATTGCACTCTTTTGAACACAAGCACATTGTTCGGGCATGTGCCTTCTCAGAGGATACACACTTCCTACTCACTGGTGGAGTTGAAAAGGTACTTCGTATATTTGATCTGAATCGCCCTGATGCACCTCCTAGAGAGGTTGAAAATTCACCTGGTTCAATCAGAACAGTTGCCTGGCTTCATAGCGACCAGACAATTTTGAGTTCCTGTACTGATAACGGGGGTGTGAGGTTATGGGATGTGAGAACTGGCAAAATTGTTCACACACTTGAGACCAAGTCACCTGTAACCAGCGCTGAAGTGAGTCAGGATGGCCGCTACATAACAACTGCAGATGGGACTACTGTTAAGTTTTGGGATGCAAATCATTATGGATTAGTGAAAAGCTACAACATGCCCTGCAACATGGAATCGGCTTCATTGGAACCAAAGTTTGGCAATAAGTTCATTGCTGGAGGAGAAGATATGTGGATTCATATGTTTGATTTCAATACCGGGGAAGAGATTGGATGCAACAAGGGTCACCATGGCCCTGTACACTGTGTGCGTTTCTCGCCCGGGGGTGAATCTTATGCGTCAGGATCCGAAGATGGAACCATTAGAATTTGGCAGACAGGCCCTCAGAATCTTGAAGAACCAGACAGCTTTGTGTCTGGGAAGGTCAAGGTTGTGGTCGATGAGGTTACCCGCAAGGTTGAGGGATTTCATGTTGGCAAAGACGGGAAAACTGGAAACAAGGAGAAGGCCTTAGATGGCTAA 1071 0.4575 MDSKKVGCSKLGSSKLGSHLVLHGHSRPIVNLFYSPVTPDGFFLISSSKDSTPMLRNGETGDWIGTFEGHKGAVWSCSLDTNALRAASGSADFTAKLWDALTGDELHSFEHKHIVRACAFSEDTHFLLTGGVEKVLRIFDLNRPDAPPREVENSPGSIRTVAWLHSDQTILSSCTDNGGVRLWDVRTGKIVHTLETKSPVTSAEVSQDGRYITTADGTTVKFWDANHYGLVKSYNMPCNMESASLEPKFGNKFIAGGEDMWIHMFDFNTGEEIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPQNLEEPDSFVSGKVKVVVDEVTRKVEGFHVGKDGKTGNKEKALDG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0557 356 FunFam Serine-threonine kinase receptor-associated protein 18 334 - -
Vvi9g0557 356 CDD WD40 18 308 - -
Vvi9g0557 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 193 IPR001680 GO:0005515
Vvi9g0557 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 15 57 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 144 184 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 60 99 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 102 140 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 269 308 IPR001680 GO:0005515
Vvi9g0557 356 SMART WD40_4 187 224 IPR001680 GO:0005515
Vvi9g0557 356 ProSitePatterns Trp-Asp (WD) repeats signature. 171 185 IPR019775 -
Vvi9g0557 356 Pfam Anaphase-promoting complex subunit 4 WD40 domain 151 201 IPR024977 -
Vvi9g0557 356 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Vvi9g0557 356 PRINTS G protein beta WD-40 repeat signature 171 185 IPR020472 -
Vvi9g0557 356 PRINTS G protein beta WD-40 repeat signature 86 100 IPR020472 -
Vvi9g0557 356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Vvi9g0557 356 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Vvi9g0557 356 Pfam WD domain, G-beta repeat 273 307 IPR001680 GO:0005515
Vvi9g0557 356 Pfam WD domain, G-beta repeat 64 99 IPR001680 GO:0005515
Vvi9g0557 356 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 20 347 - -
Vvi9g0557 356 SUPERFAMILY WD40 repeat-like 19 311 IPR036322 GO:0005515
Vvi9g0557 356 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 67 99 - -
Vvi9g0557 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 108 IPR001680 GO:0005515
Vvi9g0557 356 Gene3D - 19 323 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0557 Vvi-Chr9 5571689 5579737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0557 20 306 Eukaryotic Initiation Factors Gene Family AT2G46290 30.769 4.06e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0557 K13137 - vvi:100260049 692.96