Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0510 ATGGTGGGACCGTCGACGCTGGTGGGGTTACAAGATCACCTGAAATTGGCGAGGGAGTACGCTCTTGAAGGCCTCTACGACACCTCCATTATCTTCTTTGATGGTGCCATTGCTCAGATCAACAAGCACTTAAACACACTTGATGACCCTTTGATTCGCACAAAATGGATGAATGTCAAGAAAGCTCTTTCAGAGGAAACAGAGGTTGTGAAGCAGTTGGATGCAGAAAGAAGGGCCTTCAAGGAAATTCCTGGGGGACGGCGCCCTTCATCACCTCCAATCTCAACTAAATCATCTTTTGTTTTTCAACCACTGGATGAGTACCCAACTTCATCTGGTGCTCCCATGGATGATCCTGATGTATGGAGGCCACCTAGTCGGGACACTACGAGTAGAAGATCTGCAAGATCTGGTCAGGTGGGCATGAGAAAGACTTCACAAGATGGAACATGGCCTCGTGGTTCTACAAGGGGAGGAGCAGCTCCGCGTGGAGGAAAGTCTGGTGCTTCAAGTAGAACTCACTCAGGTGTCCGAGCATCGACAACTGGAAGGAAGGGCTCTAGCAAATCTAACACTGACAAGGCTGATTCAGCGAATGGTGATGCTGAAGATGGAAAATCAAAGAGGGCACAGTATGAGGGACCTGATCCAGACTTGGCTGCAATGCTTGAAAGGGATGTTTTGGAGACTAGCCCTGGAGTGAGATGGGATGATGTTGCAGGATTGAGTGAAGCCAAAAGACTCCTAGAGGAAGCTGTTGTCCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTTATGTTTGGTCCTCCTGGTACTGGCAAGACACTTTTGGCTAAAGCTGTTGCTACTGAGTGTGGTACAACATTCTTCAATGTTTCTTCTGCTACCTTAGCCTCAAAATGGCGTGGGGAGAGTGAGCGCATGGTCCGTTGCTTATTTGATCTTGCAAGAGCTTATGCTCCAAGTACTATTTTTATTGACGAGATTGATTCTCTTTGCAATGCTCGGGGGGCTTCAGGGGAGCATGAATCTTCCAGACGGGTGAAGTCTGAACTTCTGGTTCAGGTTGATGGTGTAAACAACAGTTCTACAGGTGAAGATGGTAGTCGAAAAATAGTGATGGTTCTGGCAGCTACAAATTTTCCATGGGATATAGATGAAGCACTCAGGAGGAGGCTGGAAAAGCGTATATACATCCCTCTCCCAAATTTTGAGAGTCGCAAGGAGCTTATACGGATCAATTTGAAAACTGTGGAGGTGGCTCCTGATGTAAATATCGACGAAGTGGCTCGCCGCACTGAGGGGTACAGTGGAGATGATCTGACAAATGTTTGCCGGGATGCTTCCTTAAATGGCATGAGACGGAAAATAGCAGGTAAGACACGAGATGAGATTAAGAACATGCCCAAGGACGAGATTTCAAATGATCCTGTCGCTATGTGTGACTTTGAAGAAGCAATAACCAAGGTTCAACGGAGTGTTTCTCAGGCTGATATTGAGCGCCATGAGAAGTGGTTTTCCGAATTCGGATCTGCATAG 1566 0.4693 MVGPSTLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRTKWMNVKKALSEETEVVKQLDAERRAFKEIPGGRRPSSPPISTKSSFVFQPLDEYPTSSGAPMDDPDVWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGAAPRGGKSGASSRTHSGVRASTTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPDPDLAAMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTGEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEAITKVQRSVSQADIERHEKWFSEFGSA* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0510 521 Gene3D - 231 512 IPR027417 -
Vvi9g0510 521 MobiDBLite consensus disorder prediction 131 153 - -
Vvi9g0510 521 FunFam Katanin p60 ATPase-containing subunit A1 411 497 - -
Vvi9g0510 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 518 IPR027417 -
Vvi9g0510 521 FunFam Katanin p60 ATPase-containing subunit A1 5 81 - -
Vvi9g0510 521 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 8 521 IPR028596 GO:0008017|GO:0008568|GO:0051013
Vvi9g0510 521 Pfam ATPase family associated with various cellular activities (AAA) 273 410 IPR003959 GO:0005524|GO:0016887
Vvi9g0510 521 PANTHER AAA DOMAIN-CONTAINING 26 520 - -
Vvi9g0510 521 MobiDBLite consensus disorder prediction 104 215 - -
Vvi9g0510 521 SMART AAA_5 269 412 IPR003593 GO:0016887
Vvi9g0510 521 Pfam AAA+ lid domain 432 473 IPR041569 -
Vvi9g0510 521 MobiDBLite consensus disorder prediction 196 215 - -
Vvi9g0510 521 Gene3D - 5 81 - -
Vvi9g0510 521 MobiDBLite consensus disorder prediction 168 195 - -
Vvi9g0510 521 ProSitePatterns AAA-protein family signature. 382 401 IPR003960 GO:0005524|GO:0016887
Vvi9g0510 521 CDD Kp60-NTD 10 76 - -
Vvi9g0510 521 Gene3D - 411 497 - -
Vvi9g0510 521 FunFam Katanin p60 ATPase-containing subunit A1 231 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0510 Vvi-Chr9 4959063 4963989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0510 225 513 Calmodulin-binding Proteins AT3G56690 40.339 1.00e-50 185