Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0508 ATGGAGAAAGAAAATTGGGCTACTGCTAATGCTGAAGAACTGACCACTCGAGTAACACGATCTCGAGCTGCTACATACCGTGCATCTAAGCAGATGCTTCCTAAAAATGCTTCCATGCCACAAGAACAGAAGCGGACTTCACAATCAAATTTAAAAAGGCCAGCCTTGGAGGAGAAGAACAATGCAGCTTCTGCTACCACAGCTCCTCAGTGTAAGAAGAGGGCAGTGCTTAAGGATGTCGCAAATATTTGCTGTGAAAATTTGTACATGAACTGCATTGATGCTACTAAAATTCAGAAAAGGAACAGCAAGCAGGCTAGGAAAGGTTGGGTGATGTTACCCAAGGTGGCTCCTTCTGTTACTGTAGAAATATCACTTCTTTCAGCTGATCCGAAGGCAACAGTGGCTCAAGAAGTAGAAAAACAGGAAATTGAACCTGAAGTTATATGTCTGACTATAGATGGGAATTTACCTTCCCAGTTAACTTCAAGAACTACCTTAAGGAAATGTGGCATAGCTGACAATCAGGTTGAAAAACACTGTTCTGAAATTGCTTCACAACTCCACAGCTCTTCAAATGAAGCAGAAAAGGGTAGCTTTGATGGAAAGCTGACAACATCAAGCAATCCAGATGTTAAGGATATTGATTCTGATGACAAGGATCCTCAATTGTGTAGCCTCTATGCCCCTGAAATCTATAACAATTTGCATGTTGCAGAGCTCAACCGAAGGCCATGTTCTAATTTTATGGAAACAGTGCAGCGAGATATCACTCAGAGTATGCGGGGGATTCTGGTTGACTGGCTTGTAGAGGCATCTGAGGAATACAAGTTGGTGCCAGATACACTTTACCTCACTGTACATCTCATTGATTGGTTTCTCTCTCAAAACTACATTGAAAGACAAAAACTTCAACTTCTTGGCATCACCTGCATGCTAATTGCCTCGAAGTATGAAGAAATTTGTGCCCCACGAGTGGAAGAATTTTGCTGCATCACAGACAACACTTACTCAAGAGGAGAGGTGGTGAAAATGGAGAGTCAAGTACTGAACTATTTTGGCTTTAAGATTTTTGCACCAACTGCAAAAACTTTTCTCAGGAGATTCCTACGAGCGGCACAAGCATCTTACAAGAATCCTAGTCTTGAATTGGAGTATTTGGGTAATTATCTAGCAGAGCTGACACTGATTGACTATGGCTGTCTGAAATACCTTCCTTCCATCATTGCTGCATCAGCTGTATTTCTTGCAAGATGGACACTAGATCAATCAGGCCACCCTTGGAATCCCACTCTAGAACACTACACCAGGTACAAGGCATCAGATCTCAAGACTGCAGTTTTTGCATTACAAGATTTGCAACTGAACACTAGTGGCTGCCCTCTGAATGCTATACGTGGCAAATACAGGCAGAATAAGTTCAAATCTGTAGCCAGTTTGTCTTCCCCAAAACTGCTCCAAACTCTCTTCTAA 1473 0.4216 MEKENWATANAEELTTRVTRSRAATYRASKQMLPKNASMPQEQKRTSQSNLKRPALEEKNNAASATTAPQCKKRAVLKDVANICCENLYMNCIDATKIQKRNSKQARKGWVMLPKVAPSVTVEISLLSADPKATVAQEVEKQEIEPEVICLTIDGNLPSQLTSRTTLRKCGIADNQVEKHCSEIASQLHSSSNEAEKGSFDGKLTTSSNPDVKDIDSDDKDPQLCSLYAPEIYNNLHVAELNRRPCSNFMETVQRDITQSMRGILVDWLVEASEEYKLVPDTLYLTVHLIDWFLSQNYIERQKLQLLGITCMLIASKYEEICAPRVEEFCCITDNTYSRGEVVKMESQVLNYFGFKIFAPTAKTFLRRFLRAAQASYKNPSLELEYLGNYLAELTLIDYGCLKYLPSIIAASAVFLARWTLDQSGHPWNPTLEHYTRYKASDLKTAVFALQDLQLNTSGCPLNAIRGKYRQNKFKSVASLSSPKLLQTLF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0508 490 CDD CYCLIN_AtCycA-like_rpt2 360 474 - -
Vvi9g0508 490 PANTHER CYCLINS 192 451 IPR039361 -
Vvi9g0508 490 MobiDBLite consensus disorder prediction 1 69 - -
Vvi9g0508 490 Pfam Cyclin, C-terminal domain 360 482 IPR004367 -
Vvi9g0508 490 SMART cyclin_7 364 452 IPR013763 -
Vvi9g0508 490 SMART cyclin_7 267 351 IPR013763 -
Vvi9g0508 490 Gene3D - 231 479 - -
Vvi9g0508 490 PIRSF Cyclin_A_B_D_E 14 489 IPR046965 GO:0016538|GO:0044772
Vvi9g0508 490 FunFam Mitotic cyclin 6 245 345 - -
Vvi9g0508 490 MobiDBLite consensus disorder prediction 188 211 - -
Vvi9g0508 490 SUPERFAMILY Cyclin-like 360 485 IPR036915 -
Vvi9g0508 490 Pfam Cyclin, N-terminal domain 231 357 IPR006671 -
Vvi9g0508 490 Gene3D - 245 358 - -
Vvi9g0508 490 FunFam Cyclin A1 347 479 - -
Vvi9g0508 490 SUPERFAMILY Cyclin-like 220 357 IPR036915 -
Vvi9g0508 490 MobiDBLite consensus disorder prediction 9 68 - -
Vvi9g0508 490 MobiDBLite consensus disorder prediction 188 217 - -
Vvi9g0508 490 CDD CYCLIN_AtCycA_like_rpt1 221 356 - -
Vvi9g0508 490 SMART Cyclin_C_2 360 483 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0508 Vvi-Chr9 4901267 4908637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0508 1 490 Core Cell Cycle Gene Families AT1G80370 54.361 7.03e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0508 K06627 - vvi:100254892 966.066