Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0500 ATGATAAGGGGAAATAAAATATTGGGTGCGAACCGACATGGTGGCCCAAACATTCAAGCACTTGAAATCACACACACGCTTTCTCATAATCAACCCTCTATTCCACCTGGACAAATCCCACCCGCTCTTTTCTCTACACGTGTCCTTCTGTCACTGGCTCACACTACTCCCTTCGCCATATATAAATACAAACCCTGCCAAACGCTTCCCCTCACTTTCCAACAACTTTCACACAATTTTTACGAGAAGAATATGTCACCGCAGCTCCCCAAACCCTCGCCGGAATCTTCCTCCGCCGGCCTCTATTTCAATGATACCGAGCTCACCTTAGGCCTCCCCGGCGCTACCAAGTCCGGCACCAAGCGCGGGTTCTCCGACACCGTCGGCTTGAACCTCCGTGGCCCCTGCAATACGGATCACGCTAGCAATCCATCTGAAAACGATGTTTCCGGCGACTCCAAGCCTCCGCCGGCAAAGACACAAATTGTGGGGTGGCCGCCGGTGAAAGCGAGTCGGAAGAATGTTGCGAAGATCAGCAAATATGTGAAGGTGGCGGTGGACGGAGCTCCGTATTTAAGAAAAGTTGATCTGGAGATGTACGGCAGCTATCAGCAGCTGTTGGGATCTCTCGAGGACATGTTCTCCTGCTTCCCTATTCGTAATTATCTTAATGAGAGGAAGCTTATGGATCCTGTGAAGGGATCCGACTACATGCCTACCTATGAGGACAGGGATGGAGATTGGATGCTGGTCGGCGACGTACCATGGAAAATGTTTGTGGAATCATGCAAGCGACTACGGCTGATGAAAAGCATTGAAGCAATTGGACTAGCTCCAAGGGAATCTCAAAAATGCACAAGCACAAGTGGATCAAAAAGCCTATAG 885 0.4994 MIRGNKILGANRHGGPNIQALEITHTLSHNQPSIPPGQIPPALFSTRVLLSLAHTTPFAIYKYKPCQTLPLTFQQLSHNFYEKNMSPQLPKPSPESSSAGLYFNDTELTLGLPGATKSGTKRGFSDTVGLNLRGPCNTDHASNPSENDVSGDSKPPPAKTQIVGWPPVKASRKNVAKISKYVKVAVDGAPYLRKVDLEMYGSYQQLLGSLEDMFSCFPIRNYLNERKLMDPVKGSDYMPTYEDRDGDWMLVGDVPWKMFVESCKRLRLMKSIEAIGLAPRESQKCTSTSGSKSL* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0500 294 MobiDBLite consensus disorder prediction 136 150 - -
Vvi9g0500 294 MobiDBLite consensus disorder prediction 121 164 - -
Vvi9g0500 294 FunFam Auxin-responsive protein 174 281 - -
Vvi9g0500 294 SUPERFAMILY CAD & PB1 domains 173 270 - -
Vvi9g0500 294 ProSiteProfiles PB1 domain profile. 179 271 IPR000270 GO:0005515
Vvi9g0500 294 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 102 275 IPR003311 GO:0005634|GO:0006355
Vvi9g0500 294 Gene3D - 174 282 - -
Vvi9g0500 294 Pfam AUX/IAA family 104 280 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0500 Vvi-Chr9 4853689 4861859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0500 177 288 B3 DNA Binding Superfamily AT1G19220 29.167 6.46e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi9g0500 AUX_IAA 8.9e-49 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0500 K14484 - vvi:100258296 432.95