Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0499 ATGGCCCTAGGACTCGAGATCACTGAGCTGAGGCTGGGTCTGCCCGGTCATGCCGACTCAAACCACCTTGCTGGTGTTAATGCAGTGGAGAGAAACGAGAAGAAGAGGGTGTTTTCTGAGATGTCCGGGGATAGCAGCGCCACCACTTGTGAACGGAAAGCCCAGAACAAGAACCAAGTTGTGGGGTGGCCGCCAGTCTGCTCATATCGGAGGAAGAACAGTTTTAACGACAAGGATCGAACAGAAGCTACCAAAATGTACGTGAAAGTGAGCATGGACGGCGCACCTTTTCTTCGTAAGATCGATTTGAGTTCCCACCAAGGCTACTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAACCAAGAATTTCGGCCTGCAGTTAAATTCTCTGAAGGAACTCCAGAAGATAAATGATTAG 579 0.4767 MALGLEITELRLGLPGHADSNHLAGVNAVERNEKKRVFSEMSGDSSATTCERKAQNKNQVVGWPPVCSYRRKNSFNDKDRTEATKMYVKVSMDGAPFLRKIDLSSHQGYFNLVTAFEELFGCFGIGEALKDADSSEYIPIYEDKDGDWMLVGDVPWEMFIESCKRLRIKKKSETKNFGLQLNSLKELQKIND* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0499 192 FunFam Auxin-responsive protein 80 181 - -
Vvi9g0499 192 SUPERFAMILY CAD & PB1 domains 79 170 - -
Vvi9g0499 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 174 IPR003311 GO:0005634|GO:0006355
Vvi9g0499 192 Gene3D - 79 183 - -
Vvi9g0499 192 Pfam AUX/IAA family 33 175 IPR033389 -
Vvi9g0499 192 ProSiteProfiles PB1 domain profile. 85 176 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0499 Vvi-Chr9 4851083 4852958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0499 80 184 B3 DNA Binding Superfamily AT4G23980 36.449 1.46e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vvi9g0499 AUX_IAA 5.8e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0499 K14484 - vvi:100854934 393.66