Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0497 ATGCAAATGGCAAACCAGAACGATGGTGAGCACATAATTGAGATTGGAGATCAGAGACCATCAATTCCTACTATTCAAACTCCTTCATCTTCTCCATCACATAGTAATCCATTCGAGTCTGGATTATGGATTTCTTTGCAGTTTATTCTAAGTGTTATCCAGATTGTTGCATCCATTGTGGTTTTGTCGCTGTCCAAACTAAATGGAGATCCAGACTACAAACTCTTTTCGTGGGTTGTGGGCTATGCTTGTGGCTGTGTTCTCATGCTTCCTCTTCTCTACTGCAGATATATTGTCAGAGGAACCGTGAATTTACAGCTGTATGGAATAGTGGAAGTGTTGAAGATGTCCTTGAGCTGCTTCTTTGCAGTGTGGTTCGTCCTGGGCAATGTATGGGTTTTTGGATCTTCATCTACTGGCAAGGATGATACCAAATTGGAAACGTTATGCCTAGTGTTCCTGGCGTCCGGCTGCATTATGTATGCGATGCCAGTCTTTAGATGTGCTGCCTTCTGTCTGTTGTTGCCTTTTTTGATTTTGCCAACACTGGCCTCTCCACAAGAACAAGCTAGAGAAGCCAACCCAGATTATTCCTTTAATGCACTGCCAACCTACAATTTTAAGTTAAAGGAAAATGGAACAGGTGAAAGTGGAGTCTTAGCTGCAGGGACAGATAAGGAGCGTGCCATATCCGGAGAAGATGCAGTTTGCTGCATTTGCTTGGGAAAATATGCAGACAATGATGAGGTGCGGGAGCTTCCATGCAGCCATTTCTTCCATGTGGAGTGCGTGGATAAATGGCTGAAGATTAACCCTCGGTGTCCTCTCTGTCAATCTGAGCTTGGAGGGGCTGGTGGGGCTTCAACATTGGTCACTCACTCCAGTCAGGACCAAAGCGAGAGGATGACAGATACTGCGTCTTAA 924 0.4491 MQMANQNDGEHIIEIGDQRPSIPTIQTPSSSPSHSNPFESGLWISLQFILSVIQIVASIVVLSLSKLNGDPDYKLFSWVVGYACGCVLMLPLLYCRYIVRGTVNLQLYGIVEVLKMSLSCFFAVWFVLGNVWVFGSSSTGKDDTKLETLCLVFLASGCIMYAMPVFRCAAFCLLLPFLILPTLASPQEQAREANPDYSFNALPTYNFKLKENGTGESGVLAAGTDKERAISGEDAVCCICLGKYADNDEVRELPCSHFFHVECVDKWLKINPRCPLCQSELGGAGGASTLVTHSSQDQSERMTDTAS* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0497 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 282 IPR013083 -
Vvi9g0497 307 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 30 281 - -
Vvi9g0497 307 FunFam E3 ubiquitin-protein ligase 220 286 - -
Vvi9g0497 307 SMART ring_2 237 277 IPR001841 -
Vvi9g0497 307 MobiDBLite consensus disorder prediction 288 307 - -
Vvi9g0497 307 SUPERFAMILY RING/U-box 230 281 - -
Vvi9g0497 307 Pfam Ring finger domain 237 278 IPR001841 -
Vvi9g0497 307 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Vvi9g0497 307 SMART ringv_2 236 278 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0497 Vvi-Chr9 4836806 4838497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0497 3 289 C3H Transcription Factor Family AT1G80400 39.833 1.70e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0497 - - vvi:100246284 579.711