Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0496 ATGGTATTGGGCTGCTTCTTTGCTTTTTGGTTTGTTTTGGGCAATATATGGGCTGCTAGAGTTTCCTCTGATGCAGAAAAATTGGACATGTTATGCCAACTTTTACTCAAGACTGCATGTATTATGTATGCCATCCCAGCCATAGGATGTTTCTTATTGCCTCGCATGATTTCTTCAGCATTAATGGCCCCTAGAAACCTGACTGTAACGGCCACTGCCGATCTCTTCATCTTTAAAGCACCGCCAACCAGAGCAAACTCCTTCAATACACTGCCAACCTACAGGTTTAAGTTAAAGAAAAATGGAACAGATGCAGTTGGAGTCTTGGCTGCAGGAACCGAGCAGGAGCGTGCCATATCTGAAGAAGATGCAGTTTGTTGTATTTGCTTGGAAAAATATGTTGACAATGATGAGCTGCGAGAGCTGCCATGCGGCCATTTCTTCCACAAGGAGTGTGTGGATGAGTGGCTAAAGATCAATGCACGGTGTCCTCTCTGCCAATCTGAGATAGCTAGGACTCATGGGGCTTCGACCTTTGCCGCAGGCTCCAGCCAGAATCCAAGTGAGAGGAGGACGGGTAGCGCATTGGATGAAGATGGCGGTGGACATGGAAGTACTGTGGCTTGA 627 0.4689 MVLGCFFAFWFVLGNIWAARVSSDAEKLDMLCQLLLKTACIMYAIPAIGCFLLPRMISSALMAPRNLTVTATADLFIFKAPPTRANSFNTLPTYRFKLKKNGTDAVGVLAAGTEQERAISEEDAVCCICLEKYVDNDELRELPCGHFFHKECVDEWLKINARCPLCQSEIARTHGASTFAAGSSQNPSERRTGSALDEDGGGHGSTVA* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0496 208 MobiDBLite consensus disorder prediction 178 208 - -
Vvi9g0496 208 SMART ringv_2 125 167 IPR011016 GO:0008270
Vvi9g0496 208 FunFam E3 ubiquitin-protein ligase 109 176 - -
Vvi9g0496 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
Vvi9g0496 208 SMART ring_2 126 166 IPR001841 -
Vvi9g0496 208 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Vvi9g0496 208 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 170 - -
Vvi9g0496 208 Pfam Ring finger domain 126 167 IPR001841 -
Vvi9g0496 208 SUPERFAMILY RING/U-box 117 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0496 Vvi-Chr9 4821806 4822755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0496 1 178 C3H Transcription Factor Family AT1G80400 42.932 2.42e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0496 - - vvi:109123133 306.219