Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0495 ATGGCCATTCCATCACTGGAACCACATAGTGGAAGCCAAACCTACAAATACCCCTTGCTAATGGAGAGGACAGAAAACCATGGTGACCGTGAACACATCATTGACATAACAAGGAATGATGATGCTTCATCGAGCTCATCTCATGATGATCACCATCCTGTAATGAACCCACCACAGCATGAAGAGAGACCATCAAGTAGCACTCAAACTCCTACTAATCAAACTTCATCAAACAGATTAAACTCCAGGAACTCATCATTCATGAGGAGAAGTGATGGTTATAGTCGGAGGAGGAGGAGCCCGTTGAATTCTGGGCTATGGATTTCTGTTGAGTTAGTTGTAACTGTGAGTCAGATCATAGCATCCATTGTTGTTCTGTCATTGTCAAGACATGAAAATCCACGAGCCCCATTGTTTGCATGGGTTGTGGGTTATGCATCTGGTTGTTTTGCAACACTTCCTATTCTTTACTGGCGCTATCGTACCCGAAACCAGAGTAATGAGCAAGAGTCTAGTCAATCACGTCAGGTCTCTTCTCAAAACAACCCTTCTTCTGAACCTACTTCTTATACAGCTATCTCGGTCAATCAAGCCTCAGAAACCGCCGGAGCAGCCACAAGACGCAGTAGATTTGTAGGAATCTTTCGTATGAGGTTCAGTGGAATGGTGGACCATTTTAAGATGGCCTTGGACTGCTTCTTTGCAGTGTGGTTTGTTGTGGGCAATGTGTGGATATTTGGAGGTCACTCTTCTCCCTCTGATGCTCCCAAATTGTACAGGTTATGCATAGTGTTCCTCACCTTTAGCTGTATTGGCTATGCTATGCCATTCATACTATGTGCAACAATCTGTTGCTGCTTGCCTTGTATAATTTCAATTCTGGGCTTTCGAGAGGACCTTTCTCAAACGAGAGGAGCTGCTCCAGAATCTATTGATGCCCTACCAACATACAAATTTAAGTTAAAGAAAAATGGAGATGTTGATGATCAGGAAGTCAACTCAGGAGCAGGTGAAGGTGGAGTCTTGGCTGCAGGAACTGAAAAAGAGCGTGCCATATCTGGTGAAGACGCTGTTTGTTGTATCTGCTTGGCAAAATATGCTGACAATGAAGAGCTGCGGGAGCTACCTTGCTGCCATTTTTTCCATGTGGAGTGTGTGGATAAATGGCTGAAGATCAATGCACTATGCCCCCTCTGTAAATTTGAGGTTGGTGGAACTAGTGGGGCATCACCCAATGCCACAAGCACCAGTGAGCACCAAAGGGAGAGGCCGACAGGTAACGCATCAACTGAAGGTGGTAGTAGTATATATGGTACTACGATGTTTTAA 1329 0.4462 MAIPSLEPHSGSQTYKYPLLMERTENHGDREHIIDITRNDDASSSSSHDDHHPVMNPPQHEERPSSSTQTPTNQTSSNRLNSRNSSFMRRSDGYSRRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRHENPRAPLFAWVVGYASGCFATLPILYWRYRTRNQSNEQESSQSRQVSSQNNPSSEPTSYTAISVNQASETAGAATRRSRFVGIFRMRFSGMVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGFREDLSQTRGAAPESIDALPTYKFKLKKNGDVDDQEVNSGAGEGGVLAAGTEKERAISGEDAVCCICLAKYADNEELRELPCCHFFHVECVDKWLKINALCPLCKFEVGGTSGASPNATSTSEHQRERPTGNASTEGGSSIYGTTMF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0495 442 FunFam E3 ubiquitin-protein ligase 342 409 - -
Vvi9g0495 442 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Vvi9g0495 442 MobiDBLite consensus disorder prediction 60 89 - -
Vvi9g0495 442 MobiDBLite consensus disorder prediction 167 189 - -
Vvi9g0495 442 MobiDBLite consensus disorder prediction 39 58 - -
Vvi9g0495 442 MobiDBLite consensus disorder prediction 407 442 - -
Vvi9g0495 442 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Vvi9g0495 442 SUPERFAMILY RING/U-box 352 404 - -
Vvi9g0495 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 407 IPR013083 -
Vvi9g0495 442 Pfam Ring finger domain 359 400 IPR001841 -
Vvi9g0495 442 MobiDBLite consensus disorder prediction 39 100 - -
Vvi9g0495 442 SMART ring_2 359 399 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0495 Vvi-Chr9 4814481 4819008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0495 14 410 C3H Transcription Factor Family AT1G80400 61.481 4.85e-169 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0495 - - vvi:100261663 812.757