LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g0490	ATGGAGTTCCTGAGCTCAATCGTGGGTCTGATCCCCTGCTTCTATGATCACACCTCCAAGCATACGGTCTACATTCGTGATCTAAAACAAAATCTCCAAGCCTTGAGGAAGGAAATGGCGGAGCTCAACAACTTGTATGAAGATGTGAAGGCAAGGGTTGAAGGTGCAGAGCAACGACAGATGATGCGCAGAAAGGAAGTGGGTGGCTGGATCTGTGAAGTAGAAGTCATGGTGACAGAAGTTCAAGAAATTCTGCAAAAGGGTGATCAAGAAATCCAGAAGAGATGTCTCGGATGCTGTCCCAGGAATTGTTGGTCTAGCTACAAGATTGGGAAGGCAGTAAGCGAAAAGCTGGTTGCTGTATCTGGTCAAATCGGCAAAGGACATTTCGATGTTGTAGCCGAGATGCTGCCTCGTCCTCTAGTAGATGAACTGCCCATGGAGGAGACTGTGGGCTCAGAATTGGCGTATGGCAGAATCTGTGGGTTTCTCAAAGATCCACAAGTGGGAATTATGGGATTATATGGAATGGGCGGTGTGGGCAAAACCACCCTCTTGAAGAAAATCCACAATAACTTCCTCCCTACATCCAGCGATTTTGATGTTGTGATTTGGGATGTGGTGTCAAAACCGTCCAACGTTGAAAAAATTCAGAAAGTTCTTTGGAATAAATTACAACTCTCACGTGATGGATGGGAATGTAGAAGCACTAAGGAGGAGAAGGCTGCCGAAATATTGAGAGTTTTGAAAACAAAGAAGTTCGTGTTGCTGTTGGATGACATCTGGGAGCGACTCGATCTCCTAGAAATGGGGGTCCCCCATCCCGATGCTCAAAATAAGTCCAAGATAGTTTTCACAACCCGCTCACAGGATGTGTGCCGCCAAATGCAAGCTCAGAAGAGTATAAAAGTGGAGTGTTTGTCATCAGAAGCGGCTTGGACTTTGTTTCAGAAGAAGGTAGGAGAAGAAACATTAAAGTTTCATCCACATATACCGAGGCTTGCAAAGATTGTTGCTGAAGAGTGCAAAGGTTTACCTCTCTCTTTGGTTACTGTTGGGCGAGCCATGGTGGGTGAGAAAGATCCCTCAAATTGGGACAAGGTAATACAAGATTTGAGCAAATTTCCAGCTGAAATTTCAGGTATGGAAGATGAATTGTTTAATAGATTAAAAGTGAGTTATGATAGATTGTCTGACAATGCCATCAAATCTTGTTTTATACATTGTTCCTTATTCTCTGAAGATGTGGTGATTCGTATTGAAACCCTTATAGAGCAGTGGATTGGAGAGGGACTTTTGGGTGAAGTTCATGACATATATGAAGCGCGCAATCAAGGGCATAAAATTGTTAAAAAGCTAAAGCATGCATGTTTAGTGGAGAGTTACGGTTTAAGAGAAAAATGGGTTGTGATGCATGATGTGATCCACGACATGGCTTTATGGTTATATGGTGAATGTGGGAAGGAAAAGAACAAAATTTTAGTATACAATGATGTTTTTAGGCTGAAGGAAGCTGCAGAAATTTCAGAACTTAAAGAGACGGAGAAGATGTCATTGTGGGATCAGAATCTTGAGAAGTTCCCTGAAACATTGATGTGTCCCAATCTCAAGACTTTATTTGTGAGGAGATGTCATCAGTTGACGAAATTTTCGAGTGGATTCTTTCAATTTATGCCTCTAATTAGAGTTTTGAATTTGGCGTGCAATGATAATTTAAGTGAGTTACCTACTGGGATTGGTGAATTGAATGGCTTGAGATATCTTAATTTGTCATCCACAAGAATAAGAGAGTTGCCCATTGAGCTAAAAAATTTGAAAAAATTGATGATTTTGCATCTGAATTCTATGCAATCCCCTGTAACTATCCCACAAGACTTGATATCAAATCTCATATCTTTAAAGTTTTTCAGCCTGTGGAATACCAATATTTTAAGTGGAGTTGAAACCTTGCTTGAGGAGTTGGAGTCCTTGAATGACATCAATCAGATAAGAATCAACATATCTAGTGCTCTTTCATTGAACAAATTAAAGAGAAGCCACAAATTACAGAGGTGTATAAGCGATCTAGGGTTACATAATTGGGGGGATGTAATCACACTTGAACTATCATCTTCATTTTTAAAAAGAATGGAGCATTTAGGAGCGCTTCATGTACACGATTGCGATGATGTGAATATAAGTATGGAAAGAGAAATGACACAAAATGATGTTATTGGTCTCTCGAACTACAACGTTGCAAGGGAGCAATACTTTTATAGCCTTCGTTTCATAGTAATAGGAAATTGTTCAAAATTGTTAGACTTAACATGGGTTGTTTATGCTTCATGTCTAGAAGCACTTTATGTTGAAGATTGTGAATCAATAGAACTAGTACTACATGATGATCATGGAGCTTATGAAATTGTGGAAAAATTGGACATATTTTCAAGGCTCAAATACCTCAAGCTCAATAGACTGCCAAGATTGAAGAGCATCTACCAGCATCCTCTGCTCTTTCCCTCGCTTGAAATCATCAAGGTGTATGATTGCAAAAGCTTAAGGAGCCTCCCATTCGATTCCAACACTTCGAACAACAATCTTAAGAAAATTAAAGGAGAGACAAATTGGTGGAATCGGTTGAGGTGGAAAGATGAAACTATCAAGGACTCTTTTACTCCATATTTCCAAGTCGACAAAGCTGAAGCATATTTTGCAGAGGAGTCCGAAACTAGCAGCATAGATGATGATATGCAGGAACAGCTGGTATCAAATTAA	2754	0.4005	MEFLSSIVGLIPCFYDHTSKHTVYIRDLKQNLQALRKEMAELNNLYEDVKARVEGAEQRQMMRRKEVGGWICEVEVMVTEVQEILQKGDQEIQKRCLGCCPRNCWSSYKIGKAVSEKLVAVSGQIGKGHFDVVAEMLPRPLVDELPMEETVGSELAYGRICGFLKDPQVGIMGLYGMGGVGKTTLLKKIHNNFLPTSSDFDVVIWDVVSKPSNVEKIQKVLWNKLQLSRDGWECRSTKEEKAAEILRVLKTKKFVLLLDDIWERLDLLEMGVPHPDAQNKSKIVFTTRSQDVCRQMQAQKSIKVECLSSEAAWTLFQKKVGEETLKFHPHIPRLAKIVAEECKGLPLSLVTVGRAMVGEKDPSNWDKVIQDLSKFPAEISGMEDELFNRLKVSYDRLSDNAIKSCFIHCSLFSEDVVIRIETLIEQWIGEGLLGEVHDIYEARNQGHKIVKKLKHACLVESYGLREKWVVMHDVIHDMALWLYGECGKEKNKILVYNDVFRLKEAAEISELKETEKMSLWDQNLEKFPETLMCPNLKTLFVRRCHQLTKFSSGFFQFMPLIRVLNLACNDNLSELPTGIGELNGLRYLNLSSTRIRELPIELKNLKKLMILHLNSMQSPVTIPQDLISNLISLKFFSLWNTNILSGVETLLEELESLNDINQIRINISSALSLNKLKRSHKLQRCISDLGLHNWGDVITLELSSSFLKRMEHLGALHVHDCDDVNISMEREMTQNDVIGLSNYNVAREQYFYSLRFIVIGNCSKLLDLTWVVYASCLEALYVEDCESIELVLHDDHGAYEIVEKLDIFSRLKYLKLNRLPRLKSIYQHPLLFPSLEIIKVYDCKSLRSLPFDSNTSNNNLKKIKGETNWWNRLRWKDETIKDSFTPYFQVDKAEAYFAEESETSSIDDDMQEQLVSN*	918

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g0490	917	Gene3D	-	156	304	IPR027417	-
	Vvi9g0490	917	Gene3D	Ribonuclease Inhibitor	495	660	IPR032675	-
	Vvi9g0490	917	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	33	855	-	-
	Vvi9g0490	917	PRINTS	Disease resistance protein signature	248	262	-	-
	Vvi9g0490	917	PRINTS	Disease resistance protein signature	603	619	-	-
	Vvi9g0490	917	PRINTS	Disease resistance protein signature	171	186	-	-
	Vvi9g0490	917	PRINTS	Disease resistance protein signature	342	356	-	-
	Vvi9g0490	917	Gene3D	-	394	480	IPR036388	-
	Vvi9g0490	917	Gene3D	Ribonuclease Inhibitor	661	868	IPR032675	-
	Vvi9g0490	917	FunFam	Probable disease resistance protein At5g66910	306	393	-	-
	Vvi9g0490	917	Gene3D	-	306	393	IPR042197	-
	Vvi9g0490	917	Pfam	Leucine rich repeat	534	595	IPR001611	GO:0005515
	Vvi9g0490	917	FunFam	Probable disease resistance protein At1g63360	394	481	-	-
	Vvi9g0490	917	FunFam	Probable disease resistance protein At1g61300	133	301	-	-
	Vvi9g0490	917	Pfam	NB-ARC domain	159	395	IPR002182	GO:0043531
	Vvi9g0490	917	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	409	IPR027417	-
	Vvi9g0490	917	Coils	Coil	25	59	-	-
	Vvi9g0490	917	SMART	AAA_5	168	303	IPR003593	GO:0016887
	Vvi9g0490	917	SUPERFAMILY	L domain-like	466	871	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g0490	Vvi-Chr9	4722409	4725162	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g0490	172	412	WRKY Transcription Factor Family	AT5G45050	25.410	1.03e-06	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g0490	-		K13459	vvi:100246379	1555.04