LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g0484	ATGGAGTTCCTGAGCTCAATCGTGGGTCTGATCCCCTGTTTCTATGATCACACCTCCGAGCATACGGTCTACATTCGTGATCTGAAAAAAAATCTCCAAGCCTTGAGCAAGGAAATGGCGGAGCTCAACAACTTGTATGAAGATGTGAAGGCAAGGGTTGAAGGTGCAGAGCAACGACAGATGATGCGCAGAAAGGAAGTGGGTGGCTGGATCTGTGAAGTAGAAGTCATGGTGACGGAAGTTCAAGAAATTCTGCAAAAGGGTAATCAAGAAATCCAGAAGAGATGTCTCGGATGCTGTCCTAGGAATTGTTGGTCAAGCTACAAGATTGGGAAGGCAGTAAGCGAAAAGCTGGTTGCTGTATCTGGTCAAATCGGCAAAGGACATTTCGATGTTGTAGCCGAGATGCTGCCTCGTCCTCTAGTAGATGAGCTGCCCATGGAGGAGACTGTGGGCTCAGAATTGGCGTATGGCAGAATCTGTGGGTTTCTCAAAGATCCACAAGTGGGAATTATGGGATTATATGGAATGGGGGGTGTGGGCAAAACCACCCTCTTGAAGAAAATCAACAATGACTTCCTCATTACATCCAGCGATTTTGATGTTGTAATTTGGGATGTAGTGTCAAAACCGCCCAGCATTGAAAAAATTCAGGAAGTTATTTGGAATAAATTACAAATCCCACGTGATATATGGGAAATTAAAAGCACTAAGGAGCAGAAGGCTGCAGAAATATCGAGAGTTCTGAAAACAAAGAAGTTCGTGTTGTTGTTGGATGACATTTGGGAGAGACTTGATCTGCTAGAAATGGGGGTCCCGCATCCCGATGCTCAAAATAAATCCAAGATAATTTTCACGACCCGGTCACAAGACGTGTGCCACCGAATGAAAGCTCAGAAGAGCATAGAAGTGACGTGTTTGTCATCAGAAGCAGCTTGGACTTTGTTTCAGAAGGAGGTAGGAGAAGAAACATTGAAGTCTCATCCACATATACCGAGGCTTGCAAAGACTGTTGCTGAAGAGTGCAAAGGTTTACCTCTCGCTTTGATTACTCTAGGGCGAGCCATGGTGGCTGAGAAAGATCCCTCAAATTGGGACAAGGTAATACAAGTTTTGAGCAAATTTCCAGCTAAAATTTCAGGTATGGAAGATGAATTGTTTCATAGATTAAAAGTCAGTTATGATAGATTGTCTGACAATGCCATCAAATCTTGTTTTATATATTGTTCCTTATTCTCTGAAGATTGGGAGATTTCAAAGGAAGTCCTTATAGAATATTGGATAGGAGAGGGATTTTTGGGTGAAGTTCATGACATACATGAAGCACGTAATCAAGGGCATGAAATTGTTAAAAAATTAAAGCATGCATGTTTATTGGAGAGTTGCGGCTCGAGAGAACAAAGGGTTAAGATGCATGATGTGATCCATGACATGGCTTTATGGTTATATTGTGAATGTGGGGAGAAGAAGAACAAAATTTTAGTATACAATGATGTTTCTAGGTTGAAGGTAGCTCAAGAAATTCCAGAATTGAAAGAGACAGAGAAGATGTCATTATGGGATCAAAATGTTGAAGAGTTCCCTAAAACATTGGTGTGTCCCAATCTTCAGACTTTAAATGTAACTGGTGATAAGTTGAAGAAATTTCCAAGTGGATTCTTTCAATTTATGCCTCTAATAAGAGTTTTGGATTTGTCAAATAATGATAATTTCAATGAGTTGCCTACTGGAATTGGTAAATTGGGCACCTTGAGATATCTTAATTTGTCATCCACAAAAATAAGAGAGTTGCCTATTGAACTTTCAAATTTGAAAAACCTAATGACTTTGCTTTTGGCGGATATGGAATCCTCTGAATTAATTATTCCGCAAGAATTGATATCAAGTCTTATATCTTTAAAGTTGTTCAACATGAGCAATACCAATGTCTTAAGTGGAGTTGAAGAAAGCTTGCTAGATGAGTTGGAGTCCTTGAATGGCATCAGTGAGATAAGTATCACCATGTCTACTACTCTTTCATTCAACAAATTAAAGACTAGTCACAAATTGCAAAGGTGCATAAGTCAATTCCAGTTGCATAAATGTGGAGATATGATCTCACTTGAACTATCGTCTTCGTTTTTGAAAAAAATGGAGCATTTGCAACGGCTTGATATATCTAATTGCGATGAATTAAAAGACATAGAAATGAAAGTGGAAGGAGAAGGGACACAAAGTGACGCAACTCTCAGAAACTACATTGTTGTAAGGGAGAACTACTTTCACACCCTTCGTCACGTATATATTATTCTTTGTCCAAAATTGTTGAACATAACATGGCTTGTTTGTGCTCCATATCTTGAGGAACTTAGCATTGAAGATTGTGAATCAATAGAACAATTGATATGTTATGGAGTAGAGGAAAAATTGGACATATTCTCAAGGCTCAAATACCTCAAGCTCGATAGGCTGCCAAGATTGAAGAACATCTACCAGCATCCGCTGCTCTTTCCCTCACTTGAAATCATCAAGGTGTATGATTGCAAACTCTTAAGGAGCCTCCCATTCGATTCCAACACTTCAAACAACAATCTTAAGAAAATTAAAGGAGAGACAAGCTGGTGGAATCAGTTGAAATGGAAAGATGAAACTATCAAGGACTCTTTTATTCCATATTTCCAAGTCCATGAAGCTGAAGCATATTTTGCAGAGGAGTCTGAAACTAGCAGCATAGATGATAGGCAAGAACAGCTGATATCAAATTAA	2745	0.3934	MEFLSSIVGLIPCFYDHTSEHTVYIRDLKKNLQALSKEMAELNNLYEDVKARVEGAEQRQMMRRKEVGGWICEVEVMVTEVQEILQKGNQEIQKRCLGCCPRNCWSSYKIGKAVSEKLVAVSGQIGKGHFDVVAEMLPRPLVDELPMEETVGSELAYGRICGFLKDPQVGIMGLYGMGGVGKTTLLKKINNDFLITSSDFDVVIWDVVSKPPSIEKIQEVIWNKLQIPRDIWEIKSTKEQKAAEISRVLKTKKFVLLLDDIWERLDLLEMGVPHPDAQNKSKIIFTTRSQDVCHRMKAQKSIEVTCLSSEAAWTLFQKEVGEETLKSHPHIPRLAKTVAEECKGLPLALITLGRAMVAEKDPSNWDKVIQVLSKFPAKISGMEDELFHRLKVSYDRLSDNAIKSCFIYCSLFSEDWEISKEVLIEYWIGEGFLGEVHDIHEARNQGHEIVKKLKHACLLESCGSREQRVKMHDVIHDMALWLYCECGEKKNKILVYNDVSRLKVAQEIPELKETEKMSLWDQNVEEFPKTLVCPNLQTLNVTGDKLKKFPSGFFQFMPLIRVLDLSNNDNFNELPTGIGKLGTLRYLNLSSTKIRELPIELSNLKNLMTLLLADMESSELIIPQELISSLISLKLFNMSNTNVLSGVEESLLDELESLNGISEISITMSTTLSFNKLKTSHKLQRCISQFQLHKCGDMISLELSSSFLKKMEHLQRLDISNCDELKDIEMKVEGEGTQSDATLRNYIVVRENYFHTLRHVYIILCPKLLNITWLVCAPYLEELSIEDCESIEQLICYGVEEKLDIFSRLKYLKLDRLPRLKNIYQHPLLFPSLEIIKVYDCKLLRSLPFDSNTSNNNLKKIKGETSWWNQLKWKDETIKDSFIPYFQVHEAEAYFAEESETSSIDDRQEQLISN*	915

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g0484	914	Gene3D	-	394	480	IPR036388	-
	Vvi9g0484	914	Gene3D	Ribonuclease Inhibitor	778	865	IPR032675	-
	Vvi9g0484	914	Pfam	Leucine rich repeat	534	594	IPR001611	GO:0005515
	Vvi9g0484	914	Pfam	NB-ARC domain	159	395	IPR002182	GO:0043531
	Vvi9g0484	914	Gene3D	Ribonuclease Inhibitor	487	745	IPR032675	-
	Vvi9g0484	914	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	33	848	-	-
	Vvi9g0484	914	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	409	IPR027417	-
	Vvi9g0484	914	FunFam	Probable disease resistance protein At1g63360	394	481	-	-
	Vvi9g0484	914	FunFam	Probable disease resistance protein At1g61300	133	301	-	-
	Vvi9g0484	914	Gene3D	-	306	393	IPR042197	-
	Vvi9g0484	914	FunFam	Probable disease resistance protein At5g66910	306	393	-	-
	Vvi9g0484	914	ProSiteProfiles	Leucine-rich repeat profile.	583	605	IPR001611	GO:0005515
	Vvi9g0484	914	Coils	Coil	25	59	-	-
	Vvi9g0484	914	PRINTS	Disease resistance protein signature	171	186	-	-
	Vvi9g0484	914	PRINTS	Disease resistance protein signature	342	356	-	-
	Vvi9g0484	914	PRINTS	Disease resistance protein signature	709	725	-	-
	Vvi9g0484	914	PRINTS	Disease resistance protein signature	248	262	-	-
	Vvi9g0484	914	Gene3D	-	156	304	IPR027417	-
	Vvi9g0484	914	SUPERFAMILY	L domain-like	462	861	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g0484	Vvi-Chr9	4681243	4683987	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g0484	172	479	WRKY Transcription Factor Family	AT5G45050	23.975	6.04e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g0484	-		K13459	vvi:109123189	1812.35