Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0474 ATGGAGTTCGTGAGCTCAATCGTGGGTTTGGTCCCCTGCTTCTATGATCACACCTCCAAGCACACGGTCTACATTCGTGATCTGAGAAAAAATCTCCAAGCCTTGAGCAAAGAAATGGTGGATCTGAACAACTTGTATGAAGATGTGAAGGAAAGGGTAGAACGTGCAGAGCAACAACAGATGAAGCGCAGAAAGGAAGTGGGTGGGTGGATCCGTGAAGTAGAAGCCATGGAGAAAGAAGTCCACGAAATTCGGCAAAGAGGAGATCAAGAAATCCAGAAGAGTTGTCTCGGATGCTGTCCCAGGAATTGTTGGTCTAGCTACAGGATTGGAAAGGCAGTAAGTGAAAAGCTGGTTGCTGTATCTGGTCAAATCGGCAAAGGACATTTCGATGTTGTAGCCGAGATGTTGCCTCGTCCTCCAGTTGATGAACTGCCAATGGAGGCGACTGTGGGCCCACAATTGGCGTATGAAAAGAGCTGTAGGTTTCTCAAAGATCCACAAGTGGGAATTATGGTATTGTATGGAATGGGGGGTGTTGGCAAAACCACCCTTTTGAAGAAAATCAACAATGAATTCCTTGCAACATCCAATGACTTTGAGGTTGTGATTTGGGCAGTGGTGTCAAAATCGCCCGACATTGAAAAAATTCAGCAAGTTATTTGGAATAAATTGGAAATCCCACGTGATAAATGGGAAACTAGAAGCAGTAGGGAGGAGAAGGCTGCAGAAATATTGAGAGTTCTGAAAAGAAAAAGGTTCATCTTGTTGTTGGATGACATTTGGGAGGGACTTGATCTCCTAGAAATGGGGGTCCCGCGTCCAGATACTGAAAATAAGTCCAAGATAGTTTTGACGACCCGATCACAGGATGTCTGCCACCAAATGAAAGCTCAGAAGAGTATAGAAGTGGAATGTTTGGAGTCAGAAGATGCCTGGACTTTGTTCCGGAAGGAGGTAGGAGAAGAAATATTAAATTCTCATCCGGATATACCGATGCTTGCAAAGGTTGTTGCTGAAGAGTGCAGAGGTTTACCTCTCGCTCTTGTCACTCTTGGGCGGGCCATGGCAGCTGAGAAAGATCCCTCAAACTGGGACAAGGTAATACAAGATCTACGCAAATCTCCAGCTGAAATCACAGGTATGGAAGATAAATTGTTTCATCGATTGAAACTCAGTTATGATAGGTTGCCTGACAATGCCAGCAAATCTTGTTTTATATATCAGTCCATCTTCCGAGAGGACTGGGAGAGTTATAATTTTGAACTTATAGAACTTTGGATAGGGGAGGGGTTGTTGGGTGAAGTTCATGACATACATGAAGCACGCGATCAAGGGGAGAAAATTATTAAAACTTTAAAGCATGCATGTTTATTGGAGAGTTGTGGTTCAAGAGAAAGAAGGGTTAAGATGCATGATGTGATCCGGGACATGGCTTTGTGGTTATATGGTGAACATGGGGTGAAAAAGAACAAAATTCTAGTATACAATAAGGTTGCTAGGCTTGATGAAGATCAAGAAACTTCCAAATTGAAAGAAACAGAGAAGATATCATTATGGGATATGGATGTTGGGAAGTTCCCAGAAACATTGGTGTGCCCCAATCTTAAGACTTTATTTGTGAAAAACTGTTATAATTTGAAGAAATTTCCAAATGGATTCTTTCAATTCATGCTTCTACTTAGAGTTTTGGATTTGTCAGACAATGATAATTTAAGCGAGTTGCCAACTGGGATTGGTAAATTGGGTGCCTTGAGGTATCTTAATTTGTCAGTCACAAGAATAAGGGAGTTGCCCATTGAACTAAAGAATTTGAAAAATCTGATGATTTTGATTATGAATGGTATGAAATCCCTTGAAATTATTCCACAAGATATGATATCAAGCCTTATATCCTTGAAGTTGTTCTCCATTTTCGAATCCAATATTACAAGTGGAGTTGAAGAAACTGTACTGGAGGAGTTGGAGTCCTTGAATGACATCAGTGAGATATCAATCACCATATGCAATGCTCTTTCATTCAACAAACTAAAGAGTAGTCGTAAATTACAAAGGTGCATACGTAATCTATTTTTACATAAATGGGGGGATGTGATCTCACTTGAACTATCATCTTCATTTTTTAAAAGAACGGAGCATTTGAGGGTGCTTTATATAAGCCATTGCGATAAATTGAAAGAAGTGAAAATTAATGTGGAAAGAGAAGGGATACACAATGATATGACTCTTCCAAACAAAATTGCAGCAAGGGAGGAATATTTCCACACCCTTCGTAAGGTGCTTATAGAACATTGTTCAAAATTGTTAGACTTAACATGGCTTGTTTATGCTCCATATCTTGAACATCTTCGTGTTGAAGATTGTGAATCAATAGAAGAAGTGATACATGATGATAGTGAAGTCGGTGAAATGAAGGAAAAATTGGACATATTCTCAAGGCTCAAATACCTCAAGCTCAATAGGCTGCCAAGATTGAAGAGCATCTATCAGCATCTGCTACTCTTTCCCTCTCTTGAAATCATCAAGGTGTATGAATGCAAAGGCTTAAGGAGTCTCCCATTTGATTCCGACACTTCAAATAATAGTCTGAAGAAAATTAAAGGAGAGACAAGTTGGTGGAATCAGTTGAAGTGGAACAATGAAACTTGCAAGCACTCTTTTACTCCGTATTTCCAAATCCATGAAGCTGAAGCATATTCAACTGACACTGAGGAGTCTGAAACTGGCAGCATAGATGATGTGCAAGAACAACCGGTATCAAATTAA 2766 0.4017 MEFVSSIVGLVPCFYDHTSKHTVYIRDLRKNLQALSKEMVDLNNLYEDVKERVERAEQQQMKRRKEVGGWIREVEAMEKEVHEIRQRGDQEIQKSCLGCCPRNCWSSYRIGKAVSEKLVAVSGQIGKGHFDVVAEMLPRPPVDELPMEATVGPQLAYEKSCRFLKDPQVGIMVLYGMGGVGKTTLLKKINNEFLATSNDFEVVIWAVVSKSPDIEKIQQVIWNKLEIPRDKWETRSSREEKAAEILRVLKRKRFILLLDDIWEGLDLLEMGVPRPDTENKSKIVLTTRSQDVCHQMKAQKSIEVECLESEDAWTLFRKEVGEEILNSHPDIPMLAKVVAEECRGLPLALVTLGRAMAAEKDPSNWDKVIQDLRKSPAEITGMEDKLFHRLKLSYDRLPDNASKSCFIYQSIFREDWESYNFELIELWIGEGLLGEVHDIHEARDQGEKIIKTLKHACLLESCGSRERRVKMHDVIRDMALWLYGEHGVKKNKILVYNKVARLDEDQETSKLKETEKISLWDMDVGKFPETLVCPNLKTLFVKNCYNLKKFPNGFFQFMLLLRVLDLSDNDNLSELPTGIGKLGALRYLNLSVTRIRELPIELKNLKNLMILIMNGMKSLEIIPQDMISSLISLKLFSIFESNITSGVEETVLEELESLNDISEISITICNALSFNKLKSSRKLQRCIRNLFLHKWGDVISLELSSSFFKRTEHLRVLYISHCDKLKEVKINVEREGIHNDMTLPNKIAAREEYFHTLRKVLIEHCSKLLDLTWLVYAPYLEHLRVEDCESIEEVIHDDSEVGEMKEKLDIFSRLKYLKLNRLPRLKSIYQHLLLFPSLEIIKVYECKGLRSLPFDSDTSNNSLKKIKGETSWWNQLKWNNETCKHSFTPYFQIHEAEAYSTDTEESETGSIDDVQEQPVSN* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0474 921 MobiDBLite consensus disorder prediction 902 921 - -
Vvi9g0474 921 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 858 - -
Vvi9g0474 921 Gene3D - 306 393 IPR042197 -
Vvi9g0474 921 Pfam Leucine rich repeat 534 594 IPR001611 GO:0005515
Vvi9g0474 921 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 408 IPR027417 -
Vvi9g0474 921 PRINTS Disease resistance protein signature 248 262 - -
Vvi9g0474 921 PRINTS Disease resistance protein signature 342 356 - -
Vvi9g0474 921 PRINTS Disease resistance protein signature 171 186 - -
Vvi9g0474 921 PRINTS Disease resistance protein signature 556 572 - -
Vvi9g0474 921 Coils Coil 25 66 - -
Vvi9g0474 921 FunFam Probable disease resistance protein At5g66910 306 393 - -
Vvi9g0474 921 Gene3D - 394 480 IPR036388 -
Vvi9g0474 921 FunFam Probable disease resistance protein At1g61300 133 301 - -
Vvi9g0474 921 Gene3D - 154 304 IPR027417 -
Vvi9g0474 921 FunFam Probable disease resistance protein At1g63360 394 481 - -
Vvi9g0474 921 Pfam NB-ARC domain 165 395 IPR002182 GO:0043531
Vvi9g0474 921 SUPERFAMILY L domain-like 462 867 - -
Vvi9g0474 921 Gene3D Ribonuclease Inhibitor 489 890 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0474 Vvi-Chr9 4551770 4554535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0474 174 479 WRKY Transcription Factor Family AT5G45050 25.157 5.70e-07 51.6