Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0462 ATGGCGAATCGGATGAAGGAAGACGAGAAAAACGAGAAGATTATTCGTGGACTTCTGAAACTTCCCGGTAATCGGAGATGTATCAATTGCAACGGTCTGGGACCACAATACGTCTGCACAAATTTCTGGACATTTGTTTGCACAACCTGCAGTGGAATACATCGGGAGTTCACACATAGAGTGAAATCTGTGTCGATGGCTAAATTTACTTCTCAAGAAGTTACTTCCCTTCAAAATGGGGGGAATGAGCGTGCAAAGGAAATATATTTAAAAGACTGGGATCAACAACGCAATTCTTTCCCTGACAGCAGTAATGTTGATAGATTGCGAGACTTCATTAAGCATGTTTATGAGGACAGAAGGTATACCGGTGAGAGGGGCAGTGACAGGCCTCCAAGGGTAAAGATGGCTGACAGGGAGGATTCCTTTAAACAGCGTAGTGCTTCTCAGAGCCCACCTTCTGAGGATACATATGAACGGAATTATGGTGAAAGGTCTGGGCTTGGAGGACGAAATGAAGACAGAAATTTTAGATATAATTATGATGGAAGAAGTCCTGGGTATGATCAAGACAAGCAAAAATATGGTGATTACAAGAGAAGTCCAGCTCAGTTTGAGGCAGGCGATGATAGATATCGGGATGATAGATCTGGAAGTAGGAGATCTGAAGACAACAAGTTTCCGGGTGGGGAACCTAAGCTGGAGGGCAGGTCGCCGAGTTATCAAAAGGAACTGGGTTCTTCCAGTCCACCTGTGGTGCGTCCTGTTCGAGATATTTTAGGAGAGAATATTCCACCACTTCGAATAGGTGAACCTCCTAAATCAAATGGTGGCAGGGCTCCTGGTGGTTCTATACAGACACAGAGGACTGCATCATCTAGTAGCATGGGATCCATTGATGGGAATCCAGTGGAATTTAAAAGCGCAAATCTAGGAAGCCTTATTGACTTCACCAGTGATCCTGAGCCTCCTAATGCTGCCACTGCAACACAAACACAACAACCTGCAGCATCTACAGTTCAAACATTCACACCACCAACAAACTCATCTTTTGGTGGCGACAACTGGGCATCCTTTGATTCTCCTGTTCAAGAGAAAGGTTCGCAGGTTGCATCAAATGCAAACACACTGGACTCAGTTGTGTCGCAACTATCAGTTCCAGCAGCATCACCTGCAGGAAACATGATGTTACAGGCTAGTGGTACTCTGCTCAATGCAAGTATGGAAAGCATGTCAAAGTTATCCATTGGTAATGTTGCTGTTGCTACACCAGTGAATATATCAATTTTGCCTCCCGGTGGCAGTGCTGCTGTTCCTGCAGCTGCCCCTGCAGGCAATGTATCATCTATGGCTGTCAGTGGTGGCAATTCCTTTATCAATTCCAATGATGTGCAGCAGTGGCCACGTGTGCAGCAGCCTCAGCATTCTCTATTCCCCATCAATGATAATCAAATTACCGCACAACCAACCAATATCTCAGTTGGTGGTGGTTCAAACAATCAGATATGGAGTTCATCGCTTGTGTCAAATGTGCAAGGGTCTATGAGTACTCCAACTTTGCCATCATCTCAATCTACCTCAAAGCTGATTCAAGATACCAGTTCTGGAGAAGTATCAAAGGCACCTCTGGAAGCAAAATCTGTTGGAAGAAAAGCACTCCCTGAGGACCTTTTTACTGCAACTTATACATCAGTTCCTGGGTGGCAGGCAGTTCCACCTCATGGGATGGGATTTGGCATGCAATATCCTATTGCAATGCGTGCACCATCTTTTCCCCAAGCATCAAGATCCATAAATCCGTTTGATGTCAATAGTGAAGCAGCTCTAGTTCAAGCACCAATGTTTCCGTCCATGGCACCTTTGCAAGGAGCACTACCAAATGCCTCAGCTCCAACTGGTTTATTGCGACCTTCTAGCCTGGGTACCGCAATGCATCCTCAATGGGTGCAATCACAAACACAGGCGTATGCATCATCAATGCCCCCCCAACCCCTACCTTATGTATCAGGAATGCCTCAAAGTATGTACATGGGGCAGCAAATGCACAGCAATCTGCCACATCCAGGACATCAAGCCGTTGGGGGTTTTGGCAGAGATGGAGCGGCTTTTGGTCCCTCGAACATGAATCAGCAACTGGGTGGTAGATTCTCTGCACCTGCGACTCCAAATTCTTTTTCGTCCATGGGTGGAAACCCATTTGGTTAA 2205 0.4594 MANRMKEDEKNEKIIRGLLKLPGNRRCINCNGLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVTSLQNGGNERAKEIYLKDWDQQRNSFPDSSNVDRLRDFIKHVYEDRRYTGERGSDRPPRVKMADREDSFKQRSASQSPPSEDTYERNYGERSGLGGRNEDRNFRYNYDGRSPGYDQDKQKYGDYKRSPAQFEAGDDRYRDDRSGSRRSEDNKFPGGEPKLEGRSPSYQKELGSSSPPVVRPVRDILGENIPPLRIGEPPKSNGGRAPGGSIQTQRTASSSSMGSIDGNPVEFKSANLGSLIDFTSDPEPPNAATATQTQQPAASTVQTFTPPTNSSFGGDNWASFDSPVQEKGSQVASNANTLDSVVSQLSVPAASPAGNMMLQASGTLLNASMESMSKLSIGNVAVATPVNISILPPGGSAAVPAAAPAGNVSSMAVSGGNSFINSNDVQQWPRVQQPQHSLFPINDNQITAQPTNISVGGGSNNQIWSSSLVSNVQGSMSTPTLPSSQSTSKLIQDTSSGEVSKAPLEAKSVGRKALPEDLFTATYTSVPGWQAVPPHGMGFGMQYPIAMRAPSFPQASRSINPFDVNSEAALVQAPMFPSMAPLQGALPNASAPTGLLRPSSLGTAMHPQWVQSQTQAYASSMPPQPLPYVSGMPQSMYMGQQMHSNLPHPGHQAVGGFGRDGAAFGPSNMNQQLGGRFSAPATPNSFSSMGGNPFG* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0462 734 MobiDBLite consensus disorder prediction 158 231 - -
Vvi9g0462 734 MobiDBLite consensus disorder prediction 123 145 - -
Vvi9g0462 734 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vvi9g0462 734 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vvi9g0462 734 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vvi9g0462 734 MobiDBLite consensus disorder prediction 323 371 - -
Vvi9g0462 734 MobiDBLite consensus disorder prediction 123 371 - -
Vvi9g0462 734 MobiDBLite consensus disorder prediction 514 542 - -
Vvi9g0462 734 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Vvi9g0462 734 MobiDBLite consensus disorder prediction 280 301 - -
Vvi9g0462 734 MobiDBLite consensus disorder prediction 514 540 - -
Vvi9g0462 734 CDD ArfGap_AGFG 12 122 - -
Vvi9g0462 734 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vvi9g0462 734 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vvi9g0462 734 PANTHER ARFGAP/RECO-RELATED 1 734 IPR044820 GO:0005096
Vvi9g0462 734 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vvi9g0462 734 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vvi9g0462 734 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0462 Vvi-Chr9 4431072 4439646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0462 15 122 C2H2 Transcription Factor Family AT3G07940 34.513 9.15e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0462 - - vvi:100266855 1440.25