Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0449 ATGATTAGCTGCGTCAATGGGATCTTTTATCCTAATCAGTGGAACAATTACCAAATGTCTAGCGAATCCTCACTTTTGGCGTCAATGATATGTAATTGTTTTCTTGGTCAGAAAGAACAAGTTCAACAGTCAGAAAGAGTAAAATCTCTGGATGTACATCCCACAGAACCATGGATTTTGGCAAGTCTGTATTCGGGAACTGTGTGTATCTGGGACTACCATTCTCAGGAACTGGTAAAGTCTTTCAAGGTCACTGAATCACCAGTTAGGTCTGCAAAGTTCATAGCAACCAAACAATGGGTTATTACCGGAGCTGATGACAAGTTTATCCGAGTCTTCAACTATGATACAATGGTTAAGGTTGCAGAATTTGAGGCACATACCGATTACATTAGGAGTGTTGCAGTCCATCCCACCCTTCCATATGTGCTGTCGGCTTCTGATGACATGCTCATAAAGCTTTGGGATTGGGAGAAAGGTTGGGAGTGTGCTCAAATCTTTGAGGGACATGGCCACTATGTGATGCAGGTAGCCTTTAATCCCAAAGACCCCAGCACCTTTTCAAGTGCATCACTTGACGGCACCATAAAGATTTGGAATCTGAGCTCTCCTGCTCCAGATTTTACCTTGGATGGCCATTCAAAAGGGGTGAATTGCATTGATTACTTCATGAGTGGCCCTAAACCATATCTAATCTCTGGTTCTGATGATCACACTGCTAAGGTCTGCTAG 732 0.4303 MISCVNGIFYPNQWNNYQMSSESSLLASMICNCFLGQKEQVQQSERVKSLDVHPTEPWILASLYSGTVCIWDYHSQELVKSFKVTESPVRSAKFIATKQWVITGADDKFIRVFNYDTMVKVAEFEAHTDYIRSVAVHPTLPYVLSASDDMLIKLWDWEKGWECAQIFEGHGHYVMQVAFNPKDPSTFSSASLDGTIKIWNLSSPAPDFTLDGHSKGVNCIDYFMSGPKPYLISGSDDHTAKVC* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0449 243 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 203 IPR001680 GO:0005515
Vvi9g0449 243 CDD WD40 47 242 - -
Vvi9g0449 243 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Vvi9g0449 243 PRINTS G protein beta WD-40 repeat signature 231 243 IPR020472 -
Vvi9g0449 243 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Vvi9g0449 243 SMART WD40_4 203 239 IPR001680 GO:0005515
Vvi9g0449 243 SMART WD40_4 75 114 IPR001680 GO:0005515
Vvi9g0449 243 SMART WD40_4 117 156 IPR001680 GO:0005515
Vvi9g0449 243 SMART WD40_4 37 72 IPR001680 GO:0005515
Vvi9g0449 243 SMART WD40_4 160 200 IPR001680 GO:0005515
Vvi9g0449 243 SUPERFAMILY WD40 repeat-like 43 242 IPR036322 GO:0005515
Vvi9g0449 243 PANTHER COATOMER 38 242 - -
Vvi9g0449 243 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 156 - -
Vvi9g0449 243 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 156 IPR001680 GO:0005515
Vvi9g0449 243 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 167 203 - -
Vvi9g0449 243 Gene3D - 40 243 IPR015943 GO:0005515
Vvi9g0449 243 FunFam Coatomer alpha subunit, putative 40 243 - -
Vvi9g0449 243 Pfam WD domain, G-beta repeat 208 242 IPR001680 GO:0005515
Vvi9g0449 243 Pfam WD domain, G-beta repeat 121 156 IPR001680 GO:0005515
Vvi9g0449 243 Pfam WD domain, G-beta repeat 161 200 IPR001680 GO:0005515
Vvi9g0449 243 Pfam WD domain, G-beta repeat 77 114 IPR001680 GO:0005515
Vvi9g0449 243 Pfam WD domain, G-beta repeat 47 72 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0449 Vvi-Chr9 4274061 4276326 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0449 31 226 U-box Gene Family AT2G33340 26.106 1.27e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0449 K17302 - vvi:100853130 452.21