Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0447 ATGGATGATACAGAGGATGATGCAAGGTATCCTCCAAACCCTTATGGTGTGAACCACCCTCAGGGTTATGGTTCTTCACACCGTCCAAAGCTTCCAGTGAGGAATACTTCCTATCAGAGGCGAATTGGTAATCAATATGTTGATGAAGATGTTGAGGATGAAGATGATGAGGAAGATGAAGAAGAATTAGGACATGAAGAAGATGAGGATGTTGATCAGAACAATGCTCTTGGACAAGTAAGCAAAGAGGAGGAGGATGACGATGACGATGATGAAGACGATAACAATGACAATGACAATGATGAGGATGAAGATCATGACAATCAGAAAGATCATACAAGGAGGGTTGAAGATGTTAGTTTAGAGAGGCACCAAAAGAAGCGGAAGCTAAAGAGCCTGATTTCAAGTTATGAATTTGCTCCACGTGTAGCAGTGCCTTCAGCTGTGGCTGCTCCGGCCCCAAAACCATCCTTTGGTGGTCGTAATTCTCTTACAGATTGGACTGAACATGAAACATTTGTCTTGCTAGATGCTTGGGGCGATCGGTTTCTTAAACTTGGGAGGAAGAGTCTTAGATCAGAGGAATGGCAGGAAGTCGCAGAGAAGGTTTCACGGGAGTCAAGAACCGAGCGGACAGATACTCAGTGCCGGAATCGTTTGGATACACTGAAGAAGAAGTATAAAAAGGAGAATATGAAGTCAGGGGAGACTGGTGGTGGCACTAATAAATGGGTTTATTTTAAGAAGATGGATATGTTAATGTCTGCAGCGCCACGTCAAGCTGGGCTTTCTTGTGGATTGGACTCAGGAGAGTATGTTTTCATGAACCCTAGAGTTTATTTGAACCGTCCAAATGGGTTGGATGAGATGAGGGACAGTCCAGGGAATTCAGGATCTTCAGGAGGTGAGGAGGATGATTCAGATGGACTTCCACCCAAGAGAAAAAGCTGTGGACAGGACAATAATGAGGGATCTTCCTTCAGATTGCTAGCAAATTCTATTCAGAAATTTAGCGAGATATATGAGAAGATTGAGAATAGTAAAAGGCAGCAGATGGTTGAACTGGAGAAAATGAGGATGGATTTCCATAGGGATTTGGAATTGCAGAAGAGGCAAATTGTAGAGAGGGCACAAGCTGAGATCGCAAAAATACGGCAAGGTGATGATGAAGAGACTGAGGTTTCTACTGAGAATGTCAGTGGGCAAAAGAGAATATATTGGAAGTGCCTGAAAAGAACACAGCAAGGTACACATGATACATACAATTAG 1269 0.4318 MDDTEDDARYPPNPYGVNHPQGYGSSHRPKLPVRNTSYQRRIGNQYVDEDVEDEDDEEDEEELGHEEDEDVDQNNALGQVSKEEEDDDDDDEDDNNDNDNDEDEDHDNQKDHTRRVEDVSLERHQKKRKLKSLISSYEFAPRVAVPSAVAAPAPKPSFGGRNSLTDWTEHETFVLLDAWGDRFLKLGRKSLRSEEWQEVAEKVSRESRTERTDTQCRNRLDTLKKKYKKENMKSGETGGGTNKWVYFKKMDMLMSAAPRQAGLSCGLDSGEYVFMNPRVYLNRPNGLDEMRDSPGNSGSSGGEEDDSDGLPPKRKSCGQDNNEGSSFRLLANSIQKFSEIYEKIENSKRQQMVELEKMRMDFHRDLELQKRQIVERAQAEIAKIRQGDDEETEVSTENVSGQKRIYWKCLKRTQQGTHDTYN* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0447 422 Coils Coil 341 361 - -
Vvi9g0447 422 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 156 388 IPR044823 -
Vvi9g0447 422 MobiDBLite consensus disorder prediction 105 125 - -
Vvi9g0447 422 MobiDBLite consensus disorder prediction 1 129 - -
Vvi9g0447 422 MobiDBLite consensus disorder prediction 284 325 - -
Vvi9g0447 422 Pfam Myb/SANT-like DNA-binding domain 166 252 IPR044822 -
Vvi9g0447 422 MobiDBLite consensus disorder prediction 82 104 - -
Vvi9g0447 422 ProSiteProfiles Myb-like domain profile. 167 224 IPR001005 -
Vvi9g0447 422 Gene3D - 167 229 - -
Vvi9g0447 422 MobiDBLite consensus disorder prediction 48 69 - -
Vvi9g0447 422 FunFam trihelix transcription factor ASIL2 167 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0447 Vvi-Chr9 4256140 4257835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0447 167 406 Trihelix Transcription Factor Family AT1G54060 33.808 2.87e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi9g0447 Myb_DNA-bind_4 6.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0447 - - vvi:100244623 700.279