Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0433 ATGAGTATTATCGATTGCCAGGCCAAGTGCTGGAGCGAGTGTCCCTGTGTTGCTTATGCTTCAACTAACGACGACCGAACTGGATGTGAAATTTGGAGTAAAGAAATGCAACGACTGTTCAGGGTTGAGGAGTACTATGACGGGCAAGCCAGAGAAATTTACTTTCTACCAAGCAATCAAGCTGATGATCGATCGTGGTTTATCGATGAGAAGAGGGTGATAGAAGAAAAAAATGCAGCTGATGAGGGTATGCCGTGGTTGATCAATGCGGTGGGGGTGATAGTGGGAGGATCAGTTGGATTCATTGCATGTTCCTTATGCTATTTAGGATGGAAAGACCTCACCATCAAAGAGAAGGAGTACAATAGACAACAAGAGCTACTATTTGAGCTGGGAGCTATTACAAAATCCCTCACCAAATATGGCAATGCGAATAAACTTGAAAAGAATGGAAAGAGCTCCAATGAGTTGCAATTATTCAGCTTTCAAAGCATAGCAACTGCTACAAACAACTTCTCAACTGAAAATAAGCTCGGAGAAGGCGGGTTTGGACCGGTATATAAGGGAGTATTACTTGACAAACAAGAAATAGCAATAAAAAAACTTTCAAGAGGTTCGGGACAGGGGTTAGAGGAGTTCAAAAATGAGATCCTTCTTATTGGAAAACTCCAACATAACAATCTTGTTAGGCTTTTGGGTTGCTGCATTAAAGGAGAAGAAAAGATATTAATCTATGAGTACTTGCCCAACAAGAGCCTAGATTTCTTCCTTTTCGAGGATTGTTGGTACATAGCTTGGGAGTTGTGGAAAGAAGGCAGAATCTTAGAGCTAATGGATCAAACAATGGGTGATTTGTGTCCCAAAAATGTGATCAGGAGATGTATTCATGTGGGACTCTTGTGCGTACAAGAAAATCCAATAGATAGACCCACAATATCTGAAGTTCTTTCTATGCTTTCAAATGAAAGTATGCAACTATCTACACCAAAACAACCAGCATTTTTCATTGGAAGGACCGTCCAAGAGTCAAAGATCCCCACCAGCAGGTCAGAAAATTGTTCTCTTAATAATGAGATGAGAGATTGGCAGCACTTGGTTTCAGCTAATGGGGTCTTCAGGTTAGAATTCTTCAGCCATGGTACATCAGGGAAACGTTACTTAGGAATATTGCTCAACATTTATCACTGGCCAGTTCCACTTGGTAAAGGAGAAGTGTGGGTTGCAAACCGGAACAACCCGATCCTTGACACATCTGGATCTCTTTTGATTGACAGTGATGGCAACTTGAGAATTTCATCCAGCGGAAGTAGTCCAATTATCTTAAATTCGCGATGA 1335 0.4127 MSIIDCQAKCWSECPCVAYASTNDDRTGCEIWSKEMQRLFRVEEYYDGQAREIYFLPSNQADDRSWFIDEKRVIEEKNAADEGMPWLINAVGVIVGGSVGFIACSLCYLGWKDLTIKEKEYNRQQELLFELGAITKSLTKYGNANKLEKNGKSSNELQLFSFQSIATATNNFSTENKLGEGGFGPVYKGVLLDKQEIAIKKLSRGSGQGLEEFKNEILLIGKLQHNNLVRLLGCCIKGEEKILIYEYLPNKSLDFFLFEDCWYIAWELWKEGRILELMDQTMGDLCPKNVIRRCIHVGLLCVQENPIDRPTISEVLSMLSNESMQLSTPKQPAFFIGRTVQESKIPTSRSENCSLNNEMRDWQHLVSANGVFRLEFFSHGTSGKRYLGILLNIYHWPVPLGKGEVWVANRNNPILDTSGSLLIDSDGNLRISSSGSSPIILNSR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0433 444 Gene3D Transferase(Phosphotransferase) domain 1 245 335 - -
Vvi9g0433 444 Pfam Protein tyrosine and serine/threonine kinase 174 259 IPR001245 GO:0004672|GO:0006468
Vvi9g0433 444 SUPERFAMILY Protein kinase-like (PK-like) 155 325 IPR011009 -
Vvi9g0433 444 ProSiteProfiles Protein kinase domain profile. 172 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0433 444 SUPERFAMILY alpha-D-mannose-specific plant lectins 404 436 IPR036426 -
Vvi9g0433 444 ProSiteProfiles Bulb-type lectin domain profile. 350 444 IPR001480 -
Vvi9g0433 444 ProSiteProfiles PAN/Apple domain profile. 1 50 IPR003609 -
Vvi9g0433 444 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 135 247 - -
Vvi9g0433 444 Gene3D - 347 443 IPR036426 -
Vvi9g0433 444 Gene3D Phosphorylase Kinase; domain 1 144 244 - -
Vvi9g0433 444 Pfam PAN-like domain 5 36 IPR003609 -
Vvi9g0433 444 FunFam - 245 335 - -
Vvi9g0433 444 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 265 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0433 Vvi-Chr9 4127847 4133231 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0433 242 348 Receptor kinase-like Gene Family AT4G05200 35.714 2.08e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi9g0433 PK_Tyr_Ser-Thr 8.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0433 - - vvi:100852792 519.62