Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0431 ATGATTGACCATGCTTGGAAGTTAAAAATCACATACAACGGAGGCTTCATTGCTGTATCAAATTACAGTCAAATAGCAAGCAATACAAGTGCTATTCTACAGGATAATGGGAACTTTATATTGAGAGAGCATATGTCAGATGGAACAACACGGGTTTTGTGGCAAAGCTTTGATTATCCAACGGACACACTTCTTCCAGGAATGAAACTGGGTATCAATTTGAGAACTGGGCATCAGTGGTCATTGACTTCCTGGCTAACTAATCAGATTCCTGCTACCGGGTATTTTTCTTTTGGCGCAGATTTCCGTAATAACAGCCAATTAATCACATGGTGGAGAGGGAAGATCTACTGGACCAGCGGGTTTTGGCACAATGGGAATTTGAGTTTCGACAACCTTCGAGCTTCTTTACCACAGAAAGATCATTGGAATGATGGATACGGCTTTCGCTATATGTCAAATAAGAAAGAAATGTACTTCAGCTTTCATCCGAACGAAAGCGTGTTTTTCCCAATGTTGGTTTTGCTACCATCGGGAGTTCTCAAGAGTTTGCTTAGAACCTACGTTCACTGTGAATCCCACATTGAACGGCAAGGATGTGTGAAGCCGGATTTGCCGAAGTGTCGAAATCCGGCATCACAGCGGTTTCAATATACTGATGGTGGTTATGTAGTTTCCGAAGGATTTATGTTCGATGACAACGCGACCTCTGTGGATTGCCATTTCAGGTGCTGGAACAATTGCTCTTGTGTTGCCTTTTCCCTTCATCTCGCTGAAACTCGTTGTGTAATTTGGAGCCGAATACAACCCAGAAAATATTTTGTAGGAGAATCCCAACAGATCTACGTCCTTCAAACCGATAAAGAGGAGAACAAAAGACAACAAGAGCTACTATTTGAATTGGGAGCTATTACAAAACCTTTTACCAAGCACAATTCAAAGAAACATGAAAAGGTTGGAAAGAAAACGAATGAGTTGCAACTATTTAGCTTTCAAAGCTTAGCTGCTGCTACAAACAACTTCTCAATTGAAAATAAGCTTGGAGAAGGTGGTTTTGGACCCGTATATAAGGGAAAGTTACTCGATGGACAAGAAATAGCAATAAAGAGGCTTTCAAAAAGTTCAAGACAAGGATTGGTTGAGTTCAAAAATGAGATTGCCCTCATTGCAAAACTCCAACATGATAATCTTGTTAAACTTTTGGGATGTTGCATTAAAGAAGAAGAAAAGATACTAATTTATGAGTACTTGCCAAACAAGAGCCTGGATTTCTTCATCTTTGGTGATCCTAGCAAAAAGAATTTATTGAATTGGAAGAAACGTTATAATATCATTGAAGGGATTACTCAAGGACTTCTTTATCTCCACAAATTTTCTAGATTAAGAGTAATTCATAGAGATTTGAAAGCTAGCAATATTTTATTAGACAATGAAATGAATCCCAAGATATCAGATTTTGGTATGGCTAGAATATTTGGTCAAGATGAATGTGAAGCAAATACAAATAGAGTTGTTGGAACATATGGTTACATGTCACCAGAGTATGTCATGCAAGGCATTTTCTCTACAAAATCTGATGTATTTAGCTTTGGAGTATTGCTACTAGAGATTGTGAGCAGCAAAAAGAACCACAGTAATTATCATTATGAACGTCCTCTCAACCTCATAGGATATGCATGGGAATTGTGGAAAGAAGGTAAAGAGTTAGAATTAATGGATCAAACATTATGTGATGGTCCGAGTTCTAATAATGTAGTGAAAAGATGCATCCATGTGGGACTCCTTTGTGTGCAAGAAAATCCAAAAGATAGACCCACTATGTCAGATGTTGTTCTTATGCTTGCGAACGAAAGTATGCAACTATCCATCCCAAAGCAACCTGCATTTTTCATCAGGGGAATTGAACAAGAGCTAGAGATCCCTAAAAGAAACTCAGAGAATTGTTCTCTTAATATTGTATCAATATCTGTGATGGAAGCTAGATAA 1986 0.3822 MIDHAWKLKITYNGGFIAVSNYSQIASNTSAILQDNGNFILREHMSDGTTRVLWQSFDYPTDTLLPGMKLGINLRTGHQWSLTSWLTNQIPATGYFSFGADFRNNSQLITWWRGKIYWTSGFWHNGNLSFDNLRASLPQKDHWNDGYGFRYMSNKKEMYFSFHPNESVFFPMLVLLPSGVLKSLLRTYVHCESHIERQGCVKPDLPKCRNPASQRFQYTDGGYVVSEGFMFDDNATSVDCHFRCWNNCSCVAFSLHLAETRCVIWSRIQPRKYFVGESQQIYVLQTDKEENKRQQELLFELGAITKPFTKHNSKKHEKVGKKTNELQLFSFQSLAAATNNFSIENKLGEGGFGPVYKGKLLDGQEIAIKRLSKSSRQGLVEFKNEIALIAKLQHDNLVKLLGCCIKEEEKILIYEYLPNKSLDFFIFGDPSKKNLLNWKKRYNIIEGITQGLLYLHKFSRLRVIHRDLKASNILLDNEMNPKISDFGMARIFGQDECEANTNRVVGTYGYMSPEYVMQGIFSTKSDVFSFGVLLLEIVSSKKNHSNYHYERPLNLIGYAWELWKEGKELELMDQTLCDGPSSNNVVKRCIHVGLLCVQENPKDRPTMSDVVLMLANESMQLSIPKQPAFFIRGIEQELEIPKRNSENCSLNIVSISVMEAR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0431 661 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 88 IPR036426 -
Vvi9g0431 661 Pfam D-mannose binding lectin 20 85 IPR001480 -
Vvi9g0431 661 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 417 622 - -
Vvi9g0431 661 ProSiteProfiles PAN/Apple domain profile. 208 286 IPR003609 -
Vvi9g0431 661 Pfam PAN-like domain 231 266 IPR003609 -
Vvi9g0431 661 SUPERFAMILY Protein kinase-like (PK-like) 324 636 IPR011009 -
Vvi9g0431 661 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 281 416 - -
Vvi9g0431 661 Gene3D Transferase(Phosphotransferase) domain 1 417 626 - -
Vvi9g0431 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 44 639 - -
Vvi9g0431 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vvi9g0431 661 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Vvi9g0431 661 SMART serkin_6 341 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0431 661 ProSiteProfiles Protein kinase domain profile. 341 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0431 661 Pfam Domain of unknown function (DUF3403) 616 661 IPR021820 GO:0004674
Vvi9g0431 661 CDD STKc_IRAK 347 614 - -
Vvi9g0431 661 Pfam Protein tyrosine and serine/threonine kinase 342 612 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0431 Vvi-Chr9 4111717 4114357 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0431 323 659 Receptor kinase-like Gene Family AT4G11530 55.425 1.54e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi9g0431 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0431 - - vri:117922467 1198.34