Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0428 ATGGATTTCTGGCCAGAGTTTCTTGCAAGCAGTTGGGGGAGGGAGTTTGTGGCAGGAGGGTTGGGTGGCATGGCGGGCGTGGTGTCTGGATACCCACTTGATAGCTTGAGGATCATGCAGCAGCACTCGAGGAGTGGCTCCGCCATGACCATTCTCCGGAGAGTGATAGCCACCGAGGGCCCTGGTGCTCTCTACAGAGGCATGGGCGCACCTCTCGCTTCTGTCACCTTTCAGAATGCTATGGTTTTCCAAATCTATGCCGATCTCTCAAGAGCATGTGACCCATTGGTTGCTGCCAAAGACCCTCCTTCCTACAAAGGTGTTGCTCTAGGAGGAGTTGGAACTGGGGCCATACAGAGCCTAATGCTCGCTCCTGTTGAGCTAGTTAAAATAAGACTCCAACTACAGAGAAAAAGCTATGGAGAGACCCAACCAACAAACTGTTATAAGGGTCCAGTGAGTGTCGTCAAAAGCATATGTAGAACAGAGGGTATCCGGGGACTGTACCGAGGTTTAACCATCACAGTACTCAGAGACGCGCCCTCTCATGGAGTCTATTTCTCGACCTATGAGTACATGAGAGAGCAGCTTCACCCAGGCTGCCGAAAGACTGGACAAGAAAGCTTGAGGACAATGCTAGTAGCAGGAGGGCTAGCAGGAGTCGCGAGCTGGGTTTGTTGCTACCCTTTAGATGTTGTAAAAACCCGATTACAGGCTCAATCATCATCTTCCCCACAAAAATACAGTGGCATTGTTGACTGTTTTGTGAAGAGTGTAAAAGAGGAAGGACAGGGTGTACTCTGGAGAGGATTAGGAACAGCTGTAAGTAGAGCATTTGTGGTCAATGGGGCCATTTTTGCTGCCTATGAATTTGCTCTTAGGTACTTATGTAACAACAATGGTCATGGAACCATTCAAACAGAGAACACAGGCTAG 936 0.4936 MDFWPEFLASSWGREFVAGGLGGMAGVVSGYPLDSLRIMQQHSRSGSAMTILRRVIATEGPGALYRGMGAPLASVTFQNAMVFQIYADLSRACDPLVAAKDPPSYKGVALGGVGTGAIQSLMLAPVELVKIRLQLQRKSYGETQPTNCYKGPVSVVKSICRTEGIRGLYRGLTITVLRDAPSHGVYFSTYEYMREQLHPGCRKTGQESLRTMLVAGGLAGVASWVCCYPLDVVKTRLQAQSSSSPQKYSGIVDCFVKSVKEEGQGVLWRGLGTAVSRAFVVNGAIFAAYEFALRYLCNNNGHGTIQTENTG* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0428 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 295 IPR018108 -
Vvi9g0428 311 PRINTS Mitochondrial carrier protein signature 216 238 IPR002067 GO:0055085
Vvi9g0428 311 PRINTS Mitochondrial carrier protein signature 169 187 IPR002067 GO:0055085
Vvi9g0428 311 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Vvi9g0428 311 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Vvi9g0428 311 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Vvi9g0428 311 SUPERFAMILY Mitochondrial carrier 12 291 IPR023395 -
Vvi9g0428 311 FunFam Mitochondrial arginine transporter BAC2 11 306 - -
Vvi9g0428 311 Pfam Mitochondrial carrier protein 211 299 IPR018108 -
Vvi9g0428 311 Pfam Mitochondrial carrier protein 11 90 IPR018108 -
Vvi9g0428 311 Pfam Mitochondrial carrier protein 110 197 IPR018108 -
Vvi9g0428 311 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 296 - -
Vvi9g0428 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Vvi9g0428 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 196 IPR018108 -
Vvi9g0428 311 Gene3D Mitochondrial carrier domain 11 307 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0428 Vvi-Chr9 4091061 4093433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0428 1 307 Antiporters AT1G79900 70.455 2.94e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0428 K15109 - vvi:100265259 623.624