Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0422 ATGGGAAAAGGAACAGGAAGCTTCGGTAAGAGAAGGAACAAGACTCACACCCTCTGCGTCCGGTGCGGTCGCCGCAGCTTCCATCTGCAGAAGAGCCGATGCGCCGCCTGCGGTTTTCCCGCAGCCCGTATCAGAAAATATAACTGGAGTGTGAAGGCGATCCGGAGGAAGACAACTGGAACTGGTAGGATGAGGTACCTTCGCCATGTTGCTTGTAGGTTCAAGAGCAACTTCAGAGAAGGTACTCAAGCAGCTCCAAGGAAGAAGGGAGCAGCTGCCTCAGCTTAA 288 0.5382 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACGFPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVACRFKSNFREGTQAAPRKKGAAASA* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0422 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vvi9g0422 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vvi9g0422 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 94 - -
Vvi9g0422 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vvi9g0422 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vvi9g0422 95 FunFam Ribosomal protein L37 1 88 - -
Vvi9g0422 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0422 Vvi-Chr9 4052664 4053493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0422 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G15250 82.105 7.27e-53 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0422 K02922 - vvi:100253219 179.489