Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0413 ATGGGCGTGGACATGTCGAATCCACCCGCGTCTCGTACCAAAGACTTCTTCGCCTCTCCAGCTCTCTCTCTTAGTCTTGCTGGGATTTTTCGAGATGGCGGCGCCGCGGCTGCAGCTGCGGCCAACATGGAGGTGGAGGAAGGGGATGAGGGGAGCGGAGGAGGGCGGAGGGATGATACGGTGGAGATAAGCAGTGAGAACTCAGGCCCGGCGAGGTCAAGATCCGAAGATGAGTTTGATGGAGAAGGAGAGGGTGATGAAGATGGAGAAGGTGAGAAGGGCAAGAAGAAGAAGAGGAAGAAATATCACAGACACACTGCTGAGCAAATCAGAGAAATGGAAGCGCTATTCAAGGAGTCACCACATCCAGATGAGAAGCAAAGGCAGCAACTAAGCAAGCAACTAGGCCTTGCTCCCAGGCAAGTCAAGTTCTGGTTTCAAAACCGACGAACTCAAATTAAGGCTATACAGGAGCGCCATGAAAACTCTCTATTGAAATCAGAAATGGAGAAGCTTAGAGATGAAAATAAGGCTATGAGGGAGACCATTAAGAAGTCTTGTTGCCCCAACTGCGGCTCAGCCACCTCTAGTAGAGACCCCACCATGACAACTGAAGAACAACAGCTGAGAATCGAAAATGCAAGGCTGAAAGCCGAGGTGGAAAAACTACGAGCAGTCATTGGGAAATACCCTCCTGGAACAGGATCACCTAGCTCCTCATGCTCGGCTGGAAATGATCATGAGAACAGAAGCTCTTTGGAGTTCTACACTGGAATTTTCGGGCTTGAGAAGTCGAGAATCATGGAGATAGTTAATCAGGCAATGGAGGAGCTCAAGAAGATGGCAACTGCTGGGGAACCGCTTTGGATTAGAAGCGTTGAGACTGGTCGTGAGATACTTAATTACGACGAGTACATGAGAGAATTTTCTGTCGAAAATTCAGGCAATGGAAGGCCAAAGAGGTCAATTGAGGCCTCAAGAGAGACTGGAGTTGTGTTTGTGGACCTCCCACGGCTTGTTCAAAGTTTCATGGATGTGAATCAATGGAAGGAAATGTTTCCATGCACAATCTCAAAGGCGGCTACCGTTGATATTATCTGCAATGGTGAAGGTCCTAATAGAAATGGAGCAGTTCAATTGATGTTTGCAGAGCTGCAAATGCTCACACCCATGGTGCCCACAAGAGAGGTGTACTTTGTCCGATTCTGCAAGCAGCTGAGTGCAGATCAATGGGCGATTGTTGATGTTTCCATTGATAAAGTTGAAGATAATATCGATGCGTCCCTTGTGAAATGCAGAAAACGTCCTTCTGGCTGCATCATTGAGGATAAATCCAATGGCCACTGCAAGGTGATCTGGGTGGAGCATTTGGAATGCCAGAAAAGCACGGTTCATACCATGTACCGCCAAATTGTTAACAGTGGTCTGGCCTTTGGTGCCAAGCATTGGATTGCGACTCTGCAACTCCAGTGCGAGCGGCTGGTGTTCTTCATGGCAACCAATGTCCCCACGAAGGACTCGAGCGGCGTTGCGACACTGGCGGGAAGGAAAAGCATTCTCAAGTTGGCACAAAGAATGACCTGGAGTTTTTGTCGAGCGCTGGGGGCATCAAGCTTTAACTCATGGACAAAGGTATCGAGTAAAACAGGAGACGACATAAGGGTGGCTTCCAGGAAGAACCTGAACGATCCTGGTGAGCCTCAAGGGGTGATCCTGTGTGCAGTTTCATCTGTATGGCTGCCAGTGGCTCCCCACGTCATATTCGATTTCTTAAGAGATGAAGCTCGCCGGAGTGAGGTTAGATGA 1806 0.4889 MGVDMSNPPASRTKDFFASPALSLSLAGIFRDGGAAAAAAANMEVEEGDEGSGGGRRDDTVEISSENSGPARSRSEDEFDGEGEGDEDGEGEKGKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEMEKLRDENKAMRETIKKSCCPNCGSATSSRDPTMTTEEQQLRIENARLKAEVEKLRAVIGKYPPGTGSPSSSCSAGNDHENRSSLEFYTGIFGLEKSRIMEIVNQAMEELKKMATAGEPLWIRSVETGREILNYDEYMREFSVENSGNGRPKRSIEASRETGVVFVDLPRLVQSFMDVNQWKEMFPCTISKAATVDIICNGEGPNRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSADQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTVHTMYRQIVNSGLAFGAKHWIATLQLQCERLVFFMATNVPTKDSSGVATLAGRKSILKLAQRMTWSFCRALGASSFNSWTKVSSKTGDDIRVASRKNLNDPGEPQGVILCAVSSVWLPVAPHVIFDFLRDEARRSEVR* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0413 601 SMART START_1 269 493 IPR002913 GO:0008289
Vvi9g0413 601 Pfam START domain 270 493 IPR002913 GO:0008289
Vvi9g0413 601 MobiDBLite consensus disorder prediction 49 63 - -
Vvi9g0413 601 SUPERFAMILY Bet v1-like 262 493 - -
Vvi9g0413 601 MobiDBLite consensus disorder prediction 36 106 - -
Vvi9g0413 601 Coils Coil 206 226 - -
Vvi9g0413 601 Gene3D - 74 155 - -
Vvi9g0413 601 CDD homeodomain 103 154 IPR001356 GO:0003677
Vvi9g0413 601 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Vvi9g0413 601 SMART HOX_1 98 160 IPR001356 GO:0003677
Vvi9g0413 601 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 97 599 IPR042160 -
Vvi9g0413 601 MobiDBLite consensus disorder prediction 233 247 - -
Vvi9g0413 601 Coils Coil 155 182 - -
Vvi9g0413 601 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Vvi9g0413 601 Gene3D - 268 490 IPR023393 -
Vvi9g0413 601 ProSiteProfiles START domain profile. 260 496 IPR002913 GO:0008289
Vvi9g0413 601 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Vvi9g0413 601 SUPERFAMILY Bet v1-like 515 599 - -
Vvi9g0413 601 Pfam Homeodomain 99 154 IPR001356 GO:0003677
Vvi9g0413 601 MobiDBLite consensus disorder prediction 228 247 - -
Vvi9g0413 601 FunFam Homeobox-leucine zipper protein GLABRA 2 269 492 - -
Vvi9g0413 601 FunFam Homeobox-leucine zipper protein HDG1 84 172 - -
Vvi9g0413 601 CDD START_ArGLABRA2_like 264 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0413 Vvi-Chr9 3968554 3972003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0413 63 599 Homeobox Transcription Factor Family AT1G79840 65.818 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi9g0413 START 3.2e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0413 K09338 - vvi:100256623 1113.21