Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0400 ATGTCGTCACCTGCTCCGGCTTCATCGGCGACCACCAACAGGACCAGTCCACCACCTCCGCCTCCGACTACAAACGGAACCATTCAAGCTCCTGTCGCTTCTCCTCCGCCTCCGGGGGGTCCACGTCCGCCGAGTGGATTGACGACGGCGACACTGATTACGCTGATTGTTGGAATTGTGATCGGTGGACTGTTTGTGCTGATTGGTGTGGGAGTTCTGGTAATTTTCTGTAGGCAGAAGAAGAGGAGGGAACAGTATGGGTTGACCAATGTCTCTGGATCCAAAGATGACCCTTCTGCCCCACTTCAGCACTGGCAACAGAATGCACATCAGCCAACAAATAATACAGATCCAATGCTACCAAAGCATGCTCCTCTACTGAGCATTGGGTCAAAACCCCAATTGTCACCAGTGCATATTCCTGCTTCGCCACCACCAATGGGCATTTTGGGGACTGAGAAGCCACTCGCACCACCATCCCCAGGCATCTCCTTGGGTTTCTCAAAGAGCGCATTCACATATGAAGAATTAGCAATTGCAACAGATGGCTTCTCCAATATCAACCTCCTTGGTCAAGGTGGCTTTGGGTATGTCCATAAAGGAGTGCTTCCAAATGGGAGAGAGGTTGCTATTAAGCATTTAAAAGCTGGAAGTGGGCAGGGTGAACGAGAATTTCAGGCAGAGGTTGAGATCATTAGCCGCGTCCACCACAAGCATCTTGTTTCACTGGTTGGATACTGCACCACTGGGGCTCAGAGAATGCTTGTTTATGAGTTTGTTCCCAATGGCACCTTGCAACACCATTTGCATGGTACGGGGAGACCAACTATGAACTGGGCAACTAGAATTAAGATTGCCCTAGGCTCTGCAAAAGGATTGGCATACTTACATGAGGACTGTCATCCCAAGATCATACATCGTGATATCAAGGCAGCTAATATTCTTCTTGATCATAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCTAAGTTTGCTTCTGATACTGATACTCATGTCTCCACCCGGGTAATGGGAACTTTTGGTTACTTGGCTCCTGAGTATGCATCAAGTGGGAAACTCACTGATAAGTCAGATGTCTTTTCCTTTGGGGTTGTGCTTCTGGAGTTGATCACTGGACGCCGGCCTATTGATAAAACTGAGAATGAGAGCATCGTTGACTGGGCAAGGCCTTTGCTCACACAAGCTCTGGAAGAAAGCAAGTACGGTGCTCTTGTTGATCCAAACTTGCAGAAGGACTACAATTACAATGAAATGGCTCGAATGGTTGCTTGTGCTGCTGTTTGTGTGCGTTATTTGGCACGTCTACGCCCGCGAATGAGCCAGGTAGTCCGAGCCTTGGAAGGAAACCTACCGCTGGATGATCTAAATGAAGGAATCATACCTGGGCACAGCAGTTTTCACTGTCGCTATGGTAGCTCAGATGATGACACTATCCATGGCAGTGAGGATCTGAAGAAATTCAGGAAGATGGCATTGGAAAGCCATGAGCAAGGTAGTATAGAGTGCACTGTGCCCATCAGCGCATCTGATCCTCACACATCTAACTCGAGTTTTGAGGGCCAACAAACTTGCAAAGAGGTGGAGATGGAGAAACACAAGGAAAACATTCAAAACTCAGGTGAAAGCTCTTAA 1656 0.4807 MSSPAPASSATTNRTSPPPPPPTTNGTIQAPVASPPPPGGPRPPSGLTTATLITLIVGIVIGGLFVLIGVGVLVIFCRQKKRREQYGLTNVSGSKDDPSAPLQHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASPPPMGILGTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVAIKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLHGTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLAKFASDTDTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRRPIDKTENESIVDWARPLLTQALEESKYGALVDPNLQKDYNYNEMARMVACAAVCVRYLARLRPRMSQVVRALEGNLPLDDLNEGIIPGHSSFHCRYGSSDDDTIHGSEDLKKFRKMALESHEQGSIECTVPISASDPHTSNSSFEGQQTCKEVEMEKHKENIQNSGESS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0400 551 MobiDBLite consensus disorder prediction 88 117 - -
Vvi9g0400 551 Pfam Protein tyrosine and serine/threonine kinase 187 394 IPR001245 GO:0004672|GO:0006468
Vvi9g0400 551 CDD TM_EGFR-like 52 85 - -
Vvi9g0400 551 ProSiteProfiles Protein kinase domain profile. 184 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0400 551 SMART serkin_6 184 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0400 551 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Vvi9g0400 551 MobiDBLite consensus disorder prediction 13 44 - -
Vvi9g0400 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vvi9g0400 551 SUPERFAMILY Protein kinase-like (PK-like) 160 455 IPR011009 -
Vvi9g0400 551 FunFam Proline-rich receptor-like protein kinase PERK1 260 465 - -
Vvi9g0400 551 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 67 509 IPR047117 -
Vvi9g0400 551 MobiDBLite consensus disorder prediction 1 45 - -
Vvi9g0400 551 Gene3D Phosphorylase Kinase; domain 1 163 259 - -
Vvi9g0400 551 FunFam proline-rich receptor-like protein kinase PERK1 162 259 - -
Vvi9g0400 551 Gene3D Transferase(Phosphotransferase) domain 1 260 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0400 Vvi-Chr9 3851816 3859885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0400 18 500 Trihelix Transcription Factor Family AT1G70460 49.281 4.26e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vvi9g0400 PK_Tyr_Ser-Thr 5.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0400 - - vvi:100242918 1024.62