Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g0400 | ATGTCGTCACCTGCTCCGGCTTCATCGGCGACCACCAACAGGACCAGTCCACCACCTCCGCCTCCGACTACAAACGGAACCATTCAAGCTCCTGTCGCTTCTCCTCCGCCTCCGGGGGGTCCACGTCCGCCGAGTGGATTGACGACGGCGACACTGATTACGCTGATTGTTGGAATTGTGATCGGTGGACTGTTTGTGCTGATTGGTGTGGGAGTTCTGGTAATTTTCTGTAGGCAGAAGAAGAGGAGGGAACAGTATGGGTTGACCAATGTCTCTGGATCCAAAGATGACCCTTCTGCCCCACTTCAGCACTGGCAACAGAATGCACATCAGCCAACAAATAATACAGATCCAATGCTACCAAAGCATGCTCCTCTACTGAGCATTGGGTCAAAACCCCAATTGTCACCAGTGCATATTCCTGCTTCGCCACCACCAATGGGCATTTTGGGGACTGAGAAGCCACTCGCACCACCATCCCCAGGCATCTCCTTGGGTTTCTCAAAGAGCGCATTCACATATGAAGAATTAGCAATTGCAACAGATGGCTTCTCCAATATCAACCTCCTTGGTCAAGGTGGCTTTGGGTATGTCCATAAAGGAGTGCTTCCAAATGGGAGAGAGGTTGCTATTAAGCATTTAAAAGCTGGAAGTGGGCAGGGTGAACGAGAATTTCAGGCAGAGGTTGAGATCATTAGCCGCGTCCACCACAAGCATCTTGTTTCACTGGTTGGATACTGCACCACTGGGGCTCAGAGAATGCTTGTTTATGAGTTTGTTCCCAATGGCACCTTGCAACACCATTTGCATGGTACGGGGAGACCAACTATGAACTGGGCAACTAGAATTAAGATTGCCCTAGGCTCTGCAAAAGGATTGGCATACTTACATGAGGACTGTCATCCCAAGATCATACATCGTGATATCAAGGCAGCTAATATTCTTCTTGATCATAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCTAAGTTTGCTTCTGATACTGATACTCATGTCTCCACCCGGGTAATGGGAACTTTTGGTTACTTGGCTCCTGAGTATGCATCAAGTGGGAAACTCACTGATAAGTCAGATGTCTTTTCCTTTGGGGTTGTGCTTCTGGAGTTGATCACTGGACGCCGGCCTATTGATAAAACTGAGAATGAGAGCATCGTTGACTGGGCAAGGCCTTTGCTCACACAAGCTCTGGAAGAAAGCAAGTACGGTGCTCTTGTTGATCCAAACTTGCAGAAGGACTACAATTACAATGAAATGGCTCGAATGGTTGCTTGTGCTGCTGTTTGTGTGCGTTATTTGGCACGTCTACGCCCGCGAATGAGCCAGGTAGTCCGAGCCTTGGAAGGAAACCTACCGCTGGATGATCTAAATGAAGGAATCATACCTGGGCACAGCAGTTTTCACTGTCGCTATGGTAGCTCAGATGATGACACTATCCATGGCAGTGAGGATCTGAAGAAATTCAGGAAGATGGCATTGGAAAGCCATGAGCAAGGTAGTATAGAGTGCACTGTGCCCATCAGCGCATCTGATCCTCACACATCTAACTCGAGTTTTGAGGGCCAACAAACTTGCAAAGAGGTGGAGATGGAGAAACACAAGGAAAACATTCAAAACTCAGGTGAAAGCTCTTAA | 1656 | 0.4807 | MSSPAPASSATTNRTSPPPPPPTTNGTIQAPVASPPPPGGPRPPSGLTTATLITLIVGIVIGGLFVLIGVGVLVIFCRQKKRREQYGLTNVSGSKDDPSAPLQHWQQNAHQPTNNTDPMLPKHAPLLSIGSKPQLSPVHIPASPPPMGILGTEKPLAPPSPGISLGFSKSAFTYEELAIATDGFSNINLLGQGGFGYVHKGVLPNGREVAIKHLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCTTGAQRMLVYEFVPNGTLQHHLHGTGRPTMNWATRIKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDHNFEAKVADFGLAKFASDTDTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVVLLELITGRRPIDKTENESIVDWARPLLTQALEESKYGALVDPNLQKDYNYNEMARMVACAAVCVRYLARLRPRMSQVVRALEGNLPLDDLNEGIIPGHSSFHCRYGSSDDDTIHGSEDLKKFRKMALESHEQGSIECTVPISASDPHTSNSSFEGQQTCKEVEMEKHKENIQNSGESS* | 552 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g0400 | 551 | MobiDBLite | consensus disorder prediction | 88 | 117 | - | - | |
Vvi9g0400 | 551 | Pfam | Protein tyrosine and serine/threonine kinase | 187 | 394 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi9g0400 | 551 | CDD | TM_EGFR-like | 52 | 85 | - | - | |
Vvi9g0400 | 551 | ProSiteProfiles | Protein kinase domain profile. | 184 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g0400 | 551 | SMART | serkin_6 | 184 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi9g0400 | 551 | ProSitePatterns | Protein kinases ATP-binding region signature. | 190 | 212 | IPR017441 | GO:0005524 | |
Vvi9g0400 | 551 | MobiDBLite | consensus disorder prediction | 13 | 44 | - | - | |
Vvi9g0400 | 551 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 304 | 316 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi9g0400 | 551 | SUPERFAMILY | Protein kinase-like (PK-like) | 160 | 455 | IPR011009 | - | |
Vvi9g0400 | 551 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 260 | 465 | - | - | |
Vvi9g0400 | 551 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 67 | 509 | IPR047117 | - | |
Vvi9g0400 | 551 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Vvi9g0400 | 551 | Gene3D | Phosphorylase Kinase; domain 1 | 163 | 259 | - | - | |
Vvi9g0400 | 551 | FunFam | proline-rich receptor-like protein kinase PERK1 | 162 | 259 | - | - | |
Vvi9g0400 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 260 | 462 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi9g0400 | Vvi-Chr9 | 3851816 | 3859885 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi9g0400 | 18 | 500 | Trihelix Transcription Factor Family | AT1G70460 | 49.281 | 4.26e-150 | 446 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_PERK-1 | Vvi9g0400 | PK_Tyr_Ser-Thr | 5.8e-50 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g0400 | - | - | vvi:100242918 | 1024.62 |