Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0396 ATGCCACCATTTAATAAGGTTTTCAACCACTTCATCCCTATCTACCTACGTCACCCTTGCCTTCATTCCCCTTCACTCCCTTTGCGTTTCTCTGCGCTCCGTTTTCTCTCTGTGGACGCTGGTCTTCTGGCACGTTATAGTACATTCATGGAGGTGATCAAAGCAGTTGCCAGGCAGGGGTCAGCAACAGCGGAAAGTGTTGCCATAAGAGCCAACCAGAAGAGTTACAGTTACAATCAACTCATTTCATCTGCAAGGAAGATATCTAGTCTGTTATGTAATGGTGACATAAAACCTACTTATGGCGTGAGCAAACACAAACATTCAGGAAATGGACATCTTGGTGGTGCTCGAATAGGAATTGTGGCTAAACCTTCAGTTGAGTTTGTTGCTGGAATACTAGGAACTTGGTTTAGTGGAGGTGTTGCAGTTCCACTTGCACTTAGCTATCCAGAAGCTGAGCTCTTACATGTGATGAATGATTCGGATGTGTCCATGATATTGAGTACTGAAGATTATCGTGAACTTATGGAAAATGTTGCTGCTAAGAGTTCGGCTCAATTTTCTCTTATTCCTCCTGTTCCCAGTATTCCCTCACCGACAAGTGCACGTGATCATCCACAAACTGGAGAAATAGTTGCAGATAAAAGTTTGCAGGGGGAAATTGGTAAGTGGAATAAATTAGAAGATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAGGTCCAGATCTTGACAGAAGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATGTTCATGGGCTATTCAATGCTTTGCTTGCACCTCTCTATGCTGGTTCCACGGTTGAGTTTATGCCCAAGTTCAGTGTGAGAGGAATCTGGCAGAGATGGCGTGAATCACATCCTAAAGATGGAACTAAGGTTGATGATGCTATAACCGTGTTTACAGGAGTTCCAACTATGTATACTCGATTAATACAAGGTTATGAAGCAATGGATCCAGAATTGCAAGCTGCTTCTGCCTCTGCTGCAAGCAAGTTACGGCTCATGATGTGTGGCTCCTCTGCGCTTCCCTATCCTGTCATGCAACAATGGGAAACTATCACAGGACATCGTCTTTTGGAGCGATATGGAATGACTGAGTTTGTCATGGCAATTTCTAATCCCTTAAAAGGTGTACGGAAAGGAGGCACGGTCGGAAAACCATTCCCTGGTGTGCAGGTAAAGATTCTTGCAGATGAGAGTGAAACCGAGACAACGGGGGTTGGTGAGCTTTGCATCAAAAGCCCTTCATTATTTAAAGAATATTGGAAACTTCCTGAGGTAACTAAGGAATCATTTATTGATGGCGGGTTCTTCAAGACTGGTGATGCTGTTAAAGTGGATGACGATGGATACTACATCATCTTGGGACGTACAAGTGCTGATATTATGAAGGTTGGCGGTTACAAGTTATCTGCATTAGAAATTGAAGCAGCGTTGTTAGAGCATCCAGCGGTCTCAGAGTGCTGTGTATTGGGCTTGCCAGACAAAGACTATGGGGAAGCTGTATGTGCCATAATTGTGCCTGAAGCAGATGAAAAGAAAAAACAAGAGGAAGAACTAAAGCCAGCTATAAGCTTGGAAGAACTTTGCACCTGGGCTAAAGAGAAGCTTGCACCATACAAGCTTCCAACCCAATTGCTTCTATGGGACTTGCTGCCTCGAAATGCTATGGGAAAGGTGAACAAAAAAGAATTGAAGAGAAAGCTGGCTGCTGAAGGGCATTAG 1827 0.4368 MPPFNKVFNHFIPIYLRHPCLHSPSLPLRFSALRFLSVDAGLLARYSTFMEVIKAVARQGSATAESVAIRANQKSYSYNQLISSARKISSLLCNGDIKPTYGVSKHKHSGNGHLGGARIGIVAKPSVEFVAGILGTWFSGGVAVPLALSYPEAELLHVMNDSDVSMILSTEDYRELMENVAAKSSAQFSLIPPVPSIPSPTSARDHPQTGEIVADKSLQGEIGKWNKLEDEDPALIIYTSGTTGKPKGVVHTHKSINSQVQILTEAWGYTSADQFLHCLPLHHVHGLFNALLAPLYAGSTVEFMPKFSVRGIWQRWRESHPKDGTKVDDAITVFTGVPTMYTRLIQGYEAMDPELQAASASAASKLRLMMCGSSALPYPVMQQWETITGHRLLERYGMTEFVMAISNPLKGVRKGGTVGKPFPGVQVKILADESETETTGVGELCIKSPSLFKEYWKLPEVTKESFIDGGFFKTGDAVKVDDDGYYIILGRTSADIMKVGGYKLSALEIEAALLEHPAVSECCVLGLPDKDYGEAVCAIIVPEADEKKKQEEELKPAISLEELCTWAKEKLAPYKLPTQLLLWDLLPRNAMGKVNKKELKRKLAAEGH* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0396 608 FunFam Acyl-CoA synthetase family member 3 58 491 - -
Vvi9g0396 608 Pfam AMP-binding enzyme 112 498 IPR000873 -
Vvi9g0396 608 Pfam AMP-binding enzyme C-terminal domain 508 593 IPR025110 -
Vvi9g0396 608 Gene3D - 54 491 IPR042099 -
Vvi9g0396 608 ProSitePatterns Putative AMP-binding domain signature. 236 247 IPR020845 -
Vvi9g0396 608 PRINTS AMP-binding signature 243 251 IPR020459 -
Vvi9g0396 608 PRINTS AMP-binding signature 231 242 IPR020459 -
Vvi9g0396 608 Gene3D - 494 606 IPR045851 -
Vvi9g0396 608 CDD MCS 65 601 - -
Vvi9g0396 608 PANTHER ACYL-COA SYNTHETASE 48 605 - -
Vvi9g0396 608 SUPERFAMILY Acetyl-CoA synthetase-like 52 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0396 Vvi-Chr9 3824986 3834156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0396 228 603 Monolignol Biosynthesis Gene Families AT4G19010 26.992 1.32e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0396 K18660 - vvi:100258310 1167.91