Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0381 ATGCCTAAAATAGCCTTCGGCCGCTTCGATGATTCCTTCAGTTTGGCCTCCTTCAAGGCCTACCTTGCTGAGTTCCACTCCACCATACTCTTCGTCTTTGCTGGAGTCGGTTCAGTCATGGCTTACAACAAGTTGACATCAGACGCTGCTCTTGACCCGGCGGGGCTGGTGGCGGTTGCTGTTGCCCATGGTTTCGCTCTCTTTGTTGCAGTCGCTATTAGCGCCAACATCTCCGGTGGCCATGTTAACCCTGCGGTGACCTTCGGGCTGGTTGTTGGTGGTCAGATCACCATTCTCACTGGCATCTTGTACTGGATTGCCCAGCTTGTTGGCTCCATTCTTGCATGTTTCCTACTCAAACTTGTCACAGGAGGCTTGACGACTCCCGTCCATAGTCTTGGAGCTGGGGTTGGAGTCATTGATGCTATTGTCTTCGAGATCGTGATCACTTTCGCTCTGGTCTACACCGTCTATGCAACGGCGGTTGACCCGAAGAAGGGCTCACTGGGCATCATTGCACCCATTGCCATAGGTCTTGTTGTAGGTGCAAACATCCTGGCTGCAGGCCCATTCTCCGGTGGATCAATGAACCCCGCCCGCTCCTTCGGCCCCGCCGTCGTCAGCGGCGACTTCAAGGACAACTGGATCTACTGGGTGGGACCCCTAATTGGAGGTGGCATGGGAGGATCTGTCTATGCAATTATGTACATGGGCTCTGATCATCAACCACTAGCGTCCAGCGAATTCTAA 750 0.5373 MPKIAFGRFDDSFSLASFKAYLAEFHSTILFVFAGVGSVMAYNKLTSDAALDPAGLVAVAVAHGFALFVAVAISANISGGHVNPAVTFGLVVGGQITILTGILYWIAQLVGSILACFLLKLVTGGLTTPVHSLGAGVGVIDAIVFEIVITFALVYTVYATAVDPKKGSLGIIAPIAIGLVVGANILAAGPFSGGSMNPARSFGPAVVSGDFKDNWIYWVGPLIGGGMGGSVYAIMYMGSDHQPLASSEF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 CDD MIP 19 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 PANTHER AQUAPORIN-8 4 242 IPR034294 -
Vvi9g0381 249 SUPERFAMILY Aquaporin-like 13 238 IPR023271 -
Vvi9g0381 249 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 Gene3D Glycerol uptake facilitator protein. 2 249 IPR023271 -
Vvi9g0381 249 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi9g0381 249 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vvi9g0381 249 FunFam Probable aquaporin TIP1-1 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0381 Vvi-Chr9 3713110 3714119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0381 1 249 Major Intrinsic Protein MIP AT3G16240 76.000 2.10e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0381 K09873 - vvi:100233028 488.804