Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0377 ATGGATTGTGTGAGCCCAATCCTGGACGTCGCCACCTGCTTGTGGGATTGCACCGCCAAGAGAGCAGTTTATATTCGTAAGCTTGAAGAAAATCTCAAGTCTTTGGAGAGCTCAACGGAGGAACTGCGCAACTTAAGTGAGGATGTGATGGGAAGAGTCGAGCGTGAGGAGCAACTACAGAGTAGGCGTACGCATGAAGTGGATGGTTGGCTCCGCGCTGTACAGGCCATGGAAGCTGAAGTGGAAGAAATATTGCAAAATGGGGATCAAGAAATCCAACAGAAATGTCTCGGAACCTGTCCTAAGAATTGCAGGTCAAGCTACAAGCTGGGGAAGATTGTGAGAAGAAAGATCGATGCTGTGACTGAATTAAAGGGCAAAGGGCATTTTGATTTTGTGGCTCATAGTTTGCCTTGTGCTCCGGTGGATGAGAGACCGATGGGGAAAACTATGGGCTTAGACTTGATGTTCGAGAAGGTTCGGAGATGCCTGGAAGATGAGCAAGTAAGAAGTATTGGGTTGTATGGAATTGGGGGTGTTGGAAAAACGACCCTCTTGCAGAAAATCAATAATGAGTATTTTGGTAAAAGAAACGATTTTGATGTTGTGATGTGGATAGTGGTGTCGAAACCAATCAACATAGGAAATATTCAAGACGTGATCCTAAATAAATTAACGGCCCCAGATGACAAATGGAAGAATCGAAGCAAGGAAGAGAAGGCTGCAGAAATATGCAAGTTGTTGAAATCCAAAAACTTTGTGATATTGCTTGATGATATGTGGGACCGACTCAATCTCTTGGAGGTGGGGATCCCTGATTTGAGTGATCAAACTAAGTCCAAAGTAGTACTCACTACCCGATCTGAACGAGTATGCGATGAAATGGAGGTTCATAAGAGGATGAAGGTAGAGTGTTTGACACGGGATGAAGCGTTTTCTCTGTTTCGCGACAAGGTTGGTGAGAATATCTTGAATTCACATCCAGATATAAAAAGGCTTGCTAAGATTGTTGTTGAGGAATGCAAAGGATTGCCGCTTGCCCTCATCGTCATCGGGCGAGCAATGGCTAGCAGGAAAACTCCTCAAGAATGGGAGCAAGCAATACAAGTGTTGAAGAGTTACCCAGCAAAGTTTTCAGGTATGGGAGATCAAGTATTTCCGATTTTGAAATTCAGTTACGATCACTTGGACAATGACACCACCAAATCATGTTTCCTATATTGTTCGCTATTCCCTGAAGACCATAAAATTTGGATTGAAGACCTCATAGATCTTTGGATCGGGGAGGGGTTTATGGACAAATTTGTTGATATATATGAAGCACGCAACCAAGGAGAGGAGATTATTAGAAGCTTAAAACTTGCATGTCTCTTGGAAGGTGGTGTATCGGAACACACTTGTAAGATGCATGATGTGATCCGTGACATGGCTCTATGGTTATCATGTGATTATGGGGAAGAGAAACACAAAAGTTTTGTACTAGATCATGGTCAATTGATTGAAGCATATGAAACTGTGAAATGGAAAGAAGCTCAACGGATTTCACTATGGTATTCTAATATCAATGAAGGACTCTCTCTATCACCCTGTTTCCTCAATCTCCGAACTTTGATTTTGAGAAATAGTAACATGAAGTCACTTCCAATTGGATTCTTCCAATTCATGCCTGTCATAAGAGTTTTGGATTTGTCGTACAATGCAAATTTAGTGGAGTTACCTCTGGAGATTTGTAGATTAGAGAGTTTGGAATTTCTTAATCTAGCAAGGACGGGTATAAAAAAGATGCCTATAGAGCTGAAGAATTTGACAAAACTGAGGTGTTTGATATTAGACAATATATGGAAGCTTGAAGTAATTCCACCAAACGTGATATCTTGCCTTTCAAATTTGCAGATGTTTAGGATGCAATTATTAAACATTGAAAAGGATATTAAGGAATATGAGGAAGTTGGAGAGTTGCAGGAGTTGGAGTGCTTGCAATACCTGAGTTGGATAAGTATCACGTTACGTACAATCCCAGCTGTTCAAAAATATCTCACCTCCTTGATGCTGCAGAAGTGCGTACGACATTTAGCGATGGGCAACTGCCCAGGTTTGCAGGTGGTGGAGTTGCCACTTTCAACTTTGCAAAGACTCACTGTGCTTGAATTTCAAGGCTGTTATGATTTGGAACGTGTTAAAATAAATATGGGACTGTCTCGAGGTCATATCTCAAACTCAAACTTCCACAACCTTGTTAAGGTGTTTATTAACGGGTGTCAATTCTTGGACTTGACCTGGCTTATTTATGCTCCAAGCCTTGAGTTGCTGTGCGTTGAAGACAATCCTGCAATGGAAGAAATTATAGGGAGTGATGAGTGTGGAGACTCAGAAATTGACCAACAAAATCTCAGCATATTCTCAAGACTTGTGGTGTTATGGTTACGTGGTCTCCCAAATCTAAAGAGTATCTACAAGCAGGCCTTGCCATTTCCTTCCCTCAAAGAGATCCATGTGGCTGGTTGTCCAAATCTAAGGAAATTGCCATTGAATTCCAATAGTGCCACCAACACTTTAAAAGAAATTGAGGCGCATCGAAGCTGGTGGGAGGAGTTGGAGAGGGAGGATGACAACCTCAAGCGCACTTTCACTTCGTATCTTAAAATATGA 2649 0.4179 MDCVSPILDVATCLWDCTAKRAVYIRKLEENLKSLESSTEELRNLSEDVMGRVEREEQLQSRRTHEVDGWLRAVQAMEAEVEEILQNGDQEIQQKCLGTCPKNCRSSYKLGKIVRRKIDAVTELKGKGHFDFVAHSLPCAPVDERPMGKTMGLDLMFEKVRRCLEDEQVRSIGLYGIGGVGKTTLLQKINNEYFGKRNDFDVVMWIVVSKPINIGNIQDVILNKLTAPDDKWKNRSKEEKAAEICKLLKSKNFVILLDDMWDRLNLLEVGIPDLSDQTKSKVVLTTRSERVCDEMEVHKRMKVECLTRDEAFSLFRDKVGENILNSHPDIKRLAKIVVEECKGLPLALIVIGRAMASRKTPQEWEQAIQVLKSYPAKFSGMGDQVFPILKFSYDHLDNDTTKSCFLYCSLFPEDHKIWIEDLIDLWIGEGFMDKFVDIYEARNQGEEIIRSLKLACLLEGGVSEHTCKMHDVIRDMALWLSCDYGEEKHKSFVLDHGQLIEAYETVKWKEAQRISLWYSNINEGLSLSPCFLNLRTLILRNSNMKSLPIGFFQFMPVIRVLDLSYNANLVELPLEICRLESLEFLNLARTGIKKMPIELKNLTKLRCLILDNIWKLEVIPPNVISCLSNLQMFRMQLLNIEKDIKEYEEVGELQELECLQYLSWISITLRTIPAVQKYLTSLMLQKCVRHLAMGNCPGLQVVELPLSTLQRLTVLEFQGCYDLERVKINMGLSRGHISNSNFHNLVKVFINGCQFLDLTWLIYAPSLELLCVEDNPAMEEIIGSDECGDSEIDQQNLSIFSRLVVLWLRGLPNLKSIYKQALPFPSLKEIHVAGCPNLRKLPLNSNSATNTLKEIEAHRSWWEELEREDDNLKRTFTSYLKI* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0377 882 Gene3D - 305 392 IPR042197 -
Vvi9g0377 882 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 856 - -
Vvi9g0377 882 Gene3D - 146 302 IPR027417 -
Vvi9g0377 882 Pfam Leucine rich repeat 533 590 IPR001611 GO:0005515
Vvi9g0377 882 Pfam NB-ARC domain 156 394 IPR002182 GO:0043531
Vvi9g0377 882 Coils Coil 67 94 - -
Vvi9g0377 882 FunFam Probable disease resistance protein At1g63360 393 479 - -
Vvi9g0377 882 Coils Coil 25 48 - -
Vvi9g0377 882 Gene3D Ribonuclease Inhibitor 729 870 IPR032675 -
Vvi9g0377 882 Coils Coil 630 650 - -
Vvi9g0377 882 FunFam Probable disease resistance protein At5g66910 305 392 - -
Vvi9g0377 882 FunFam Probable disease resistance protein At1g61300 133 300 - -
Vvi9g0377 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 408 IPR027417 -
Vvi9g0377 882 Gene3D - 393 478 IPR036388 -
Vvi9g0377 882 Gene3D Ribonuclease Inhibitor 504 687 IPR032675 -
Vvi9g0377 882 PRINTS Disease resistance protein signature 341 355 - -
Vvi9g0377 882 PRINTS Disease resistance protein signature 553 569 - -
Vvi9g0377 882 PRINTS Disease resistance protein signature 247 261 - -
Vvi9g0377 882 PRINTS Disease resistance protein signature 171 186 - -
Vvi9g0377 882 SUPERFAMILY L domain-like 465 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0377 Vvi-Chr9 3688933 3691581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0377 169 477 WRKY Transcription Factor Family AT5G45050 23.602 4.41e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0377 - K13459 vvi:100260098 1771.9