Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0373 ATGGGGGAGCGACCAAGTTCGGAAGCTGAGAGTACTAGTAACAGTACTGCTTCGGCTTCTCCATCTTCGCCATCTTCATCTGGGTCTTCTCAGTCTGTTCCCAACTCGGTTTCTGACACATCCAAACAAGTCAAAGCTCAGAACCCAGCCACCAAGAGAGGGAGAGACTGCAACAGACACCCAGTGTACAGAGGGGTTCGAATGCGGAGCTGGGGCAAATGGGTGTCCGAAATTCGAGAACCGCGCAAGAAATCGAGAATCTGGCTCGGCACATTCCCGAACCCGGAAATGGCAGCGCGAGCCCATGACTCCGCCGCCTTGAGCATCAAGGGAGACTCAGCGATCCTAAACTTCCCCGACCTCGCCCATTTGCTTCCCCGGCCGGTGACGCTCTCCCCGCGCGACGTCCAGGCTGCCGCGGCCAAAGCTGCGGCAATGGAGACGCTAAATTCGACAACAACAACGACAACGACAACGTCATCGTCGTTGTCGTCTTCGTCGGAGGAGTCCACGTCGGATGAACTGAGTCAGATCGTTGAGTTGCCCAATATAGAAGGCGAGCTTGACTCGGACGAGTCGAGGAACGAGTTTATATTGGCCGACTCCGTGGAGGGGTGGTTGTATCCACCGCCGGCTACGGCGGAAGAAAACTTTTGTGCATATTTCGGTGATCCGATCAGCTTTGAAACTCTCTTTTGGGATTCTTAA 708 0.548 MGERPSSEAESTSNSTASASPSSPSSSGSSQSVPNSVSDTSKQVKAQNPATKRGRDCNRHPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPNPEMAARAHDSAALSIKGDSAILNFPDLAHLLPRPVTLSPRDVQAAAAKAAAMETLNSTTTTTTTTSSSLSSSSEESTSDELSQIVELPNIEGELDSDESRNEFILADSVEGWLYPPPATAEENFCAYFGDPISFETLFWDS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0373 235 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 MobiDBLite consensus disorder prediction 1 48 - -
Vvi9g0373 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 186 - -
Vvi9g0373 235 MobiDBLite consensus disorder prediction 1 61 - -
Vvi9g0373 235 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Vvi9g0373 235 MobiDBLite consensus disorder prediction 149 175 - -
Vvi9g0373 235 FunFam Ethylene-responsive transcription factor 2 61 120 - -
Vvi9g0373 235 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Vvi9g0373 235 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0373 Vvi-Chr9 3665231 3665938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0373 33 218 AP2-EREBP Transcription Factor Family AT5G11590 58.333 9.86e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi9g0373 AP2 3.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0373 K09286 - vvi:100243009 380.948