Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0366 ATGGATTGTGTGAGCCCAATCTTGGATGTTGTAACTCGCGTATGGAACTGCACAGCCAAGCATGCAGTCTACATCAGGGATCTGCAGGAAAATATGGAGTCTTTAAGAAACGCAATGCAGGAGCTGAAGAATGTATATGAAGATGTGAAGGGAAGAGTTGAACTTGAAGAGCAACGGCAAATGAAGCGCACAAATGAAGTGGACGGCTGGTTCCATAGCGTCCTAGCCATGGAACTAGAAGTCAACGAGATCCTGGAGAAAGGCGATCATGAAATCCAGAAGAAATGCCCTGAAACTTGTTGCCCCCGAAACTGCCGGTCCAGCTACAAGCTCGGGAAGAAAGCGAGTAAAAAGCTGGGTGCTGTGACTGAATTAAGGAGCAAGGGACGCTTTGATGTTGTGGCTGATGGGTTACCTCAAGCTCCGGTGGATGAGAGGCCGATGGAGAAGACTGTGGGCTTAGATCTGATGTTTACAGAGGTTTGCAGATGCATCCAAGATGAGGAGCTGGGAATTATTGGGTTGTACGGAATGGGGGGTGCCGGGAAAACTACCATCATGACCAAAATCAATAATGAGTACTTCAAAACATGCAATGACTTTGAAGTGGCCATTTGGGTCGTAGTATCCAGGCCAGCAAGTGTGGAAAAAGTACAAGAAGTCATTCGCAACAAGTTAGACATCCCGGATAATAGATGGAGAAACAGAACTGAGGATGAAAAAGCAATAGCAATTTTCAATGTCTTGAAGGCAAAAAGGTTTGTGATGCTGCTAGATGATGTATGGGAGCGGCTTGATCTCCAAAAAGTGGGGGTTCCTTATCCTAATTCCCAAAACAAGTCCAAAGTAATATTAACAACCCGTTCTCTGGATGTTTGTCGCGATATGGAAGCTCAAAAAAGCATTAAGGTTGAGTGTTTGACAGAAGAGGAGGCCATCAATTTGTTCAAGGAGAAGGTTGGAGAGACCACTCTAAATTCACATCCAGATATACCCCAGTTTGCCGAAATTGCTGCTAAAGAGTGCAAAGGTTTACCACTTGCACTCATCACTATTGGGAGAGCTATGGTCGGCAAGAGCACACCACAAGAATGGGAGCGAGCCATACAAATGTTGAAGACTTATCCATCAAAGTTTTCAGGTTTGGGAGATCATGTATTTCCGATTCTAAAATTCAGTTATGATAACTTGAAAAATGACACCATCAAGTCTTGTTTTCTATATCTTGCTATATTTCAAGAGGATTATGAAATCATGAATGATGATCTTATAAACCTTTGGATTGGAGAGGGGTTTTTCGATGAATTTGACAACATACATGAAGCACAGAACCAGGGGCGCAACATCATTGAGCATCTAAAGGTAGTGTGTCTATTTGAGAGTGTTAAAGACAATCAAGTCAAGATGCATGATGTTATTCGTGATATGGCTTTATGGTTAGCTTCAGAATATAGTGGCAACAAGAACAAAATTTTGGTAGTAGAAGATGATACCTTGGAAGCCCATCAAGTTTCAAATTGGCAAGAGACGCAACAGATATCATTGTGGAGTAATAGCATGAAATACCTCATGGTGCCAACAACTTATCCCAATCTCTTAACCTTCGTTGTTAAGAATGTGAAAGTAGATCCAAGTGGATTCTTTCATCTCATGCTGCCGGCAATAAAAGTTTTGGATTTGTCACACACTTCCATAAGTCGGTTACCTGATGGGTTTGGCAAATTAGTTACCTTACAATATCTCAATTTGTCAAAAACAAACCTAAGCCAATTATCCATGGAGCTCAAGTCTTTGACAAGTCTAAGGTGTCTACTATTGGATTGGATGGCATGTCTTAAGATAATTCCCAAGGAAGTAGTATTAAATCTCTCATCATTGAAATTATTTAGCTTAAGAAGAGTTCATGAATGGAAGGAAGAGGAAGCCCATTATTCATTCAACCTGGAGGATGCTAATGATTCATGGGAGAATAATAAAGTTGATTTTGATAATAAAGCATTCTTTGAGGAGTTGAAAGCTTATTATTTATCAAAGGATTGTCATGCTTTATTCGAGGAGTTGGAAGCCAAGGATTATGATTATAAACCTAGGTATTTATGGGAGGATGAAAACAGAGCATTATTAGAGGAGATGGAATCCTTGGTACACATAAATGAGGTCTCTTTTCCCATAGAAGGTGCTCCATCTTTCCAAATATTATTGAGCTCCCAAAAGCTACAGAATGCCATGAAGTGGTTAACCCTTGGGAACCTGGAGTGTGTGGCCTTACTCCACTTGCCAAGAATGAAACATCTACAGACGCTTGAAATACGGATATGTCGAGATTTGGAAGAGATAAAAGTAGATCCAACACAAGAGAGGAGACGGGGATTTGTGGTAGATTATATCCCAGGCTCAAACTTCCACAGCCTTTGTAATATAATTATTTATCAACTCCCAAACTTGTTAAACTTGACATGGCTTATTTACATCCCAAGCGTTGAAGTTCTTGAAGTAACTGACTGTTATTCCATGAAAGAAGTGATCCGAGATGAGACTGGAGTTTCACAAAATCTGAGCATATTCTCAAGACTCAGGGTACTCAAATTGGATTATCTACCTAATCTAAAGAGCATCTGTGGACGGGCCTTGCCATTCACTTCCCTGACAGACCTCTCGGTGGAACATTGCCCATTCCTAAGGAAGCTGCCGTTGGATTCCAACAGTGACACCTACAGCTTGAAGACAATTAAAGGAAGAAGATGGTGGTGGGATAGGCTGCAGTGGGAGAATGAAACCATTAAGAACACTTTCAATCACTACTTCCAAGATTAA 2814 0.4108 MDCVSPILDVVTRVWNCTAKHAVYIRDLQENMESLRNAMQELKNVYEDVKGRVELEEQRQMKRTNEVDGWFHSVLAMELEVNEILEKGDHEIQKKCPETCCPRNCRSSYKLGKKASKKLGAVTELRSKGRFDVVADGLPQAPVDERPMEKTVGLDLMFTEVCRCIQDEELGIIGLYGMGGAGKTTIMTKINNEYFKTCNDFEVAIWVVVSRPASVEKVQEVIRNKLDIPDNRWRNRTEDEKAIAIFNVLKAKRFVMLLDDVWERLDLQKVGVPYPNSQNKSKVILTTRSLDVCRDMEAQKSIKVECLTEEEAINLFKEKVGETTLNSHPDIPQFAEIAAKECKGLPLALITIGRAMVGKSTPQEWERAIQMLKTYPSKFSGLGDHVFPILKFSYDNLKNDTIKSCFLYLAIFQEDYEIMNDDLINLWIGEGFFDEFDNIHEAQNQGRNIIEHLKVVCLFESVKDNQVKMHDVIRDMALWLASEYSGNKNKILVVEDDTLEAHQVSNWQETQQISLWSNSMKYLMVPTTYPNLLTFVVKNVKVDPSGFFHLMLPAIKVLDLSHTSISRLPDGFGKLVTLQYLNLSKTNLSQLSMELKSLTSLRCLLLDWMACLKIIPKEVVLNLSSLKLFSLRRVHEWKEEEAHYSFNLEDANDSWENNKVDFDNKAFFEELKAYYLSKDCHALFEELEAKDYDYKPRYLWEDENRALLEEMESLVHINEVSFPIEGAPSFQILLSSQKLQNAMKWLTLGNLECVALLHLPRMKHLQTLEIRICRDLEEIKVDPTQERRRGFVVDYIPGSNFHSLCNIIIYQLPNLLNLTWLIYIPSVEVLEVTDCYSMKEVIRDETGVSQNLSIFSRLRVLKLDYLPNLKSICGRALPFTSLTDLSVEHCPFLRKLPLDSNSDTYSLKTIKGRRWWWDRLQWENETIKNTFNHYFQD* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0366 937 Pfam NB-ARC domain 167 396 IPR002182 GO:0043531
Vvi9g0366 937 Gene3D - 147 304 IPR027417 -
Vvi9g0366 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 409 IPR027417 -
Vvi9g0366 937 Gene3D - 306 393 IPR042197 -
Vvi9g0366 937 FunFam Probable disease resistance protein At1g61300 135 301 - -
Vvi9g0366 937 Pfam Leucine rich repeat 542 588 IPR001611 GO:0005515
Vvi9g0366 937 Gene3D - 394 478 IPR036388 -
Vvi9g0366 937 Gene3D Ribonuclease Inhibitor 798 911 IPR032675 -
Vvi9g0366 937 PRINTS Disease resistance protein signature 342 356 - -
Vvi9g0366 937 PRINTS Disease resistance protein signature 248 262 - -
Vvi9g0366 937 PRINTS Disease resistance protein signature 550 566 - -
Vvi9g0366 937 PRINTS Disease resistance protein signature 172 187 - -
Vvi9g0366 937 FunFam Probable disease resistance protein At1g63360 394 479 - -
Vvi9g0366 937 Gene3D Ribonuclease Inhibitor 485 789 IPR032675 -
Vvi9g0366 937 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 897 - -
Vvi9g0366 937 SUPERFAMILY L domain-like 466 911 - -
Vvi9g0366 937 Coils Coil 25 59 - -
Vvi9g0366 937 FunFam Probable disease resistance protein At5g66910 306 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0366 Vvi-Chr9 3565039 3567852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0366 148 477 WRKY Transcription Factor Family AT5G45050 25.806 1.03e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0366 - K13459 vvi:100260007 1873.21