Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0354 ATGGAAGCTTCGAGCTTTTTCCCCGGCGGCTACTACAGTGCCGGAGCAGACGAATTTTCGCAGGAAAAGCGAGAGCAGAAGCCTGGAGACCATTTCCTGGTCGAGGACTTGCTCGATTTCCCCAATGACGACGACATCATGACCGACGGGTTCTTCGACACTGTTACCGGAAATTCTACGGATTCTTCCACTGTCACTGTTGTTGACAGTTGTAATTCCTCCTTATCTGGCAACGAGCCTCATTTCTCGGGAGACGTTGGCTGTCGGAATTTCACCGACGCTCAATTCTCCGGCGAGCTTTGCGTTCCGTGCGATGAATTGGCTGAGCTTGAATGGCTCTCGAACTTCGTGGAAGAATCATTCTCAAGCGAAGACCTGCACAAAATCCAAGTGTTATCCGGAATCAAAGCTCCGCTCCACACTACCGAATCTCCTGAACCGCAATTCCAACCCGAAACAGCCCGAAGCGAACCGATATTACAACCTCCAATGAACGTCCCCGGCAAAGCCAGAAGCAAGCGGCCACGCTCCGTCCCCTGTGACTGGTCCACGCGCCTCCTCGTGCTTTCCCCCGCCACCTCTTCATCCGAGTCTGACGCCTTCAAGAAACCGCCCAAAACGACGTCGTCGAAGAAGAAAGAGAATTCCGACTCCGCCGGTGACGGCCGGAAGTGCCTGCATTGCGCGGCCGAGAAGACCCCGCAGTGGCGAACCGGGCCTATGGGTCCCAAAACGCTGTGCAATGCATGTGGTGTCCGATTCAAATCGGGTCGGTTGGTACCCGAATACCGACCCGCCTCGAGCCCGACGTTTGTGTCCGCAAAACACTCGAACTCCCATCGGAAGGTGCTTGAACTCAGACGTCAAAAGGATCTTCAGAGGTCTCATCACCATCAATTTCTTGGTCAAACCTCCATTTTCAGCGCAACTAACGGTGACGATTACTTGATTCATCACCACGCTGGGCCTGATTTCAGGCATATGATCTAA 990 0.5374 MEASSFFPGGYYSAGADEFSQEKREQKPGDHFLVEDLLDFPNDDDIMTDGFFDTVTGNSTDSSTVTVVDSCNSSLSGNEPHFSGDVGCRNFTDAQFSGELCVPCDELAELEWLSNFVEESFSSEDLHKIQVLSGIKAPLHTTESPEPQFQPETARSEPILQPPMNVPGKARSKRPRSVPCDWSTRLLVLSPATSSSESDAFKKPPKTTSSKKKENSDSAGDGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPASSPTFVSAKHSNSHRKVLELRRQKDLQRSHHHQFLGQTSIFSATNGDDYLIHHHAGPDFRHMI* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0354 329 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Vvi9g0354 329 FunFam GATA transcription factor 213 300 - -
Vvi9g0354 329 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Vvi9g0354 329 MobiDBLite consensus disorder prediction 139 178 - -
Vvi9g0354 329 MobiDBLite consensus disorder prediction 191 223 - -
Vvi9g0354 329 PIRSF Txn_fac_GATA_plant 15 311 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vvi9g0354 329 MobiDBLite consensus disorder prediction 204 223 - -
Vvi9g0354 329 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Vvi9g0354 329 CDD ZnF_GATA 224 271 IPR000679 GO:0006355|GO:0043565
Vvi9g0354 329 PANTHER GATA TRANSCRIPTION FACTOR 25 293 - -
Vvi9g0354 329 Gene3D - 219 270 IPR013088 GO:0006355|GO:0008270
Vvi9g0354 329 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Vvi9g0354 329 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0354 Vvi-Chr9 3439127 3440411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0354 30 329 C2C2-Gata Transcription Factor Family AT4G32890 48.742 1.43e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vvi9g0354 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0354 - - vvi:100254963 651.358