Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0353 ATGATGGCAATGTCCTGCAAGGATGGTAAAGGCATAATGGATAATGGCAAGTATGTGAGGTATACACCTGAGCAGGTTGAAGCCCTGGAGAGGCTCTATCATGAGTGCCCGAAACCCAGTTCTATTCGGCGCCAACAGCTGATTCGGGAATGTCCGATTCTGTCCAATATTGAGCCCAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTGTATGAGAATGGCTACTTCCGCCAACATACCCAGAACACAACGCTTGCCACAAAAGACACAAGTTGTGAGTCGGTGGTGACGAGCGGTCAACACCACTTGACCCCTCAGCATCCGCCCAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAGCCTACAAGGGTTGCAGAGATCCTCAAGGATCGGCCATCCTGGTTTCGCGATTGCCGAGCTGTGGATGTGCTGAATGTGTTGCCCACTGCAAATGGTGGAACTATTGAGCTGCTTTACATGCAGCTCTATGCGCCTACTACGTTGGCGCCTGCTCGTGACTTCTGGTTGTTACGTTATACTTCTGTTATGGAGGATGGAAGTCTTGTGGTCTGTGAAAGATCACTTAAAAATACTCAGAATGGTCCAAGCATGCCACCAGTGCAGCATTTTGTGAGAGCAGAAATGCTGCCAAGTGGCTACTTGATAAGACCTTGTGAAGGGGGTGGTTCAATCATACATATTGTTGATCATATGGATTTAGAGCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCGGCTTTGCGCCAGCTGAGACAAATAGCTCAGGAGGTTTCTCAGTCTAATGTCACTGGTTGGGGTAGACGACCTGCAGCACTGCGAGCGCTTAGCCAGAGGCTGAGCAGAGGTTTTAATGAGGCTCTCAATGGGTTTACTGATGAAGGGTGGTCAATGATGGGAAATGATGGCATTGATGACGTTACCATCCTTGTGAACTCATCTCCTGAGAAACTAACAGGCTTAAATCTTTCCTTTGCTAATGGATTTCCTGCAGTCAGCAATGCTGTGTTATGCGCTAAAGCATCAATGCTTTTGCAGAATGTGCCTCCAGCAATACTTCTTAGGTTTCTGCGGGAGCACAGATCAGAATGGGCAGACAACAATATTGATGCTTACTCAGCTGCAGCTGTAAAAGTTGGTCCCTGTAGTTTGCCAGGGTCTCGAGTTGGAAGTTTTGGGAGCCAAGTCATACTTCCACTGGCTCACACTATTGAGCATGAAGAGTTCTTGGAGGTCATTAAGCTGGAAGGTGTCGGCCATTGTCCTGAAGATGCAATGATGCCTAGAGACATGTTTCTCTTGCAACTATGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGGAAGCCTCCAGTCCAAATCGCACCCTAGACCTTGCATCTGCTCTTGAGATTGGGCCAGCTGGGAATAGATCATCAAATGATTATTCTGTTAATGGTGGCAATACTAGATCTGTTATGACAATTGCATTTGAATTTGCATTTGAAAGCCACCTACAAGAAAATGTAGCATCCATGGCTCGGCAGTATGTCCGCAGCATTATATCATCTGTTCAGAGGGTGGCATTAGCTCTCTCTCCTTCGCATTTAAGTTCCCATGCTGGTCTTCGACCACCACTGGGCACTCCTGAAGCGCACACACTTGCTCGTTGGATCAGTCACAGCTATAGGTGCTACCTGGGTGTGGAGCTACTCAAATCCAGTGGTGAAGGGAGTGAGACCATCCTAAAAACACTGTGGCATCTCTCAGATGCTATCATGTGCTGCTCTCTGAAGGCATTACCTGTATTCACCTTCGCAAACCAGGCTGGTCTTGATATGCTTGAGACAACCTTGGTTGCCCTGCAAGACATTACTTTGGAGAAGATATTCGATGATCATGGACGCAAGACTCTCTGCTCAGAGTTCCCTCAGATAATGCAACAGGGTTTTGCTTGCCTTCAAGGTGGTATCTGTTTGTCAAGCATGGGCCGTCCTGTCTCATATGAAAGAGCTGTGGCATGGAAGGTGCTGAATGAGGAAGAGAACGCCCATTGTGTCTGTTTTATGTTTATGAACTGGTCTTTTGTCTGA 2517 0.4779 MMAMSCKDGKGIMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESVVTSGQHHLTPQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVMEDGSLVVCERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMAALRQLRQIAQEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMMGNDGIDDVTILVNSSPEKLTGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPCSLPGSRVGSFGSQVILPLAHTIEHEEFLEVIKLEGVGHCPEDAMMPRDMFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRSSNDYSVNGGNTRSVMTIAFEFAFESHLQENVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRPPLGTPEAHTLARWISHSYRCYLGVELLKSSGEGSETILKTLWHLSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCVCFMFMNWSFV* 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0353 838 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289
Vvi9g0353 838 Gene3D - 10 83 - -
Vvi9g0353 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 838 IPR044830 GO:0003700
Vvi9g0353 838 Pfam START domain 161 369 IPR002913 GO:0008289
Vvi9g0353 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Vvi9g0353 838 Gene3D - 195 377 IPR023393 -
Vvi9g0353 838 CDD START_ArGLABRA2_like 155 371 - -
Vvi9g0353 838 SMART HOX_1 14 80 IPR001356 GO:0003677
Vvi9g0353 838 SMART START_1 160 370 IPR002913 GO:0008289
Vvi9g0353 838 SUPERFAMILY Bet v1-like 160 372 - -
Vvi9g0353 838 CDD homeodomain 17 77 IPR001356 GO:0003677
Vvi9g0353 838 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Vvi9g0353 838 CDD bZIP 69 108 - -
Vvi9g0353 838 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Vvi9g0353 838 Pfam MEKHLA domain 695 837 IPR013978 -
Vvi9g0353 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Vvi9g0353 838 Coils Coil 72 113 - -
Vvi9g0353 838 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0353 Vvi-Chr9 3415009 3424292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0353 2 790 Homeobox Transcription Factor Family AT1G52150 86.742 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi9g0353 START 1.9e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0353 K09338 - vvi:100260057 1681