Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0347 ATGCCTGTACTGCGTAGTGGAGTGCGCAGGGGTCGGCCAGCAGGAGCAGCGAACCAGCAGGAGCAGCGGGAGGCGAATCCGATTGAAGGTGAGGCGATTGCGACGAGGACACGGCGGCGGCGAGCGGCAGCAGAGGCGCCGAAAAACAGGCAGCAGCCGGCGATCGATGAGAACTTAGTCGCGGCAGGGGCGGCGGCACAAGTGCGGGGGAAGGAGGAGGACGGTAGGCGCTTGGACGAAGCTCGTGTTGGTGGTGCCGGTGGGGCCCAGAACGACGAGGTAGGGAAAAAGAAAATGGACGATTTCGATAGTGGGGGTCGGAGCGCAGAGAAGGCACATGTCGGTGAAGATGAGGGAAGCACTGCTCCCCTTCCCGAGAAGGTTCAGGTTGGAGGATCCCCGTTGTATAGGATGGAAAGGAAGTTGGGAAAGGGAGGATTTGGGCAAGTGTATGTTGGCCGTCGTGTGTCTCCTATAAATCCAAGTGACCGAACTACTGGCCCTGGGGCTCTGGAGGTGGCCCTGAAATTTGAACACAGAAGTAGCAAGGGCTGTAATTATGGGCCACCATACGAGTGGCAAGTGTACAACACTTTGGGTGGAAGTCATGGTGTACCGAGAGTCCACTTTAAGGGTCGACAGGGAGACTACTATGTCATGGTTATGGACATGCTTGGACCAAGCTTGTGGGATGTTTGGAATAATAACTCTCACACTATGTCCATTGAAATGGTTGCATGCATTGCTATTGAAGCAATATCCATATTGGAGAAGATGCACTCCAGAGGGTATGTGCATGGTGATGTCAAGCCTGAAAACTTCCTGCTTGGTCCTCCGGGAACGGCTGATGAGAAAAAATTATTTCTTGTTGATCTTGGGCTAGCCACCCGATGGCGGGAAACCACAACTGGTCTTCATGTCGACTATGACCAAAGGCCAGATGTTTTTAGGGGAACTGTGCGATATGCTAGTGTGCACGCTCATTTGGGGAGAACTGGCAGTAGGAGAGATGATTTGGAATCTCTTGCTTACACTCTTATTTTCCTCCTCCGTGGTCGTCTACCTTGGCAAGGTTATCAGGGAGAGAACAAGGGGTTCCTTGTTTGCAAGAAGAAGATGGCAACATCTCCGGAAGCTCTGTGTTGCTTCTGTCCAATGCCTTTCAGACAGTTTGTTGAATATGTGGTGAATTTGAAGTTTGATGAAGAACCTAATTATGCAAAATATATTTCCCTCTTTGATGGGATTGTAGGTCCAAACCCAGATATCAGGCCAATTAACACAGATGGTGCTCAGAAGCTTATCTATCAGGTTGGTCATAAGAGAGGCCGGTTGACTATAGAAGAAGAGGAAGATGAGCAGCCGAAGAAGAAGGTCCGTATGGGGATGCCTGCAACACAATGGATTAGTGTTTACAATGCTCGTCGACCTATGAAACAGAGGTATCACTATAATGTGGCAGATGCGAGACTTGCCCAACATATCGACAAGGGCAATGAAGATGGCTTATTTATCAGCAGTGTAGCGTCTTGTCAAAATTTGTGGGCGCTAATTATGGATGCAGGCACTGGTTTTACTGCACAAGTTTATGAGCTTTCACCCTATTTTCTTCACAAGGAATGGATAATGGAACAGTGGGAGAAAAACTTCTATATCAGTGCAATAGCAGGAGCTACTAATGGGAGCTCACTAGTTGTAATGTCTAAGGGTACACAATACTTGCAACAGTCTTACAAAGTTAGTGATTCATTTCCCTTCAAGTGGATAAATAAAAAATGGAGGGAGGGTTTCTATGTCACCTCTATGGCCACCTCAGGGAGTAGATGGGGGGTTGTTATGTCTCGTGGTGCAGGATTTTCAGAACAGGTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGGGATAATGGTTTCCGTATTACAGCAACTGCAGCAACTTGGGATCAGGCTGCTTTTGTTCTTAGTGTTCCGAGAAGAAAACCTGTAGATGAAACACAGGAGACACTTCGAACTTCAGCATTTCCTAGTACACATGTTAAGGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACAGTTTCATGA 2115 0.4809 MPVLRSGVRRGRPAGAANQQEQREANPIEGEAIATRTRRRRAAAEAPKNRQQPAIDENLVAAGAAAQVRGKEEDGRRLDEARVGGAGGAQNDEVGKKKMDDFDSGGRSAEKAHVGEDEGSTAPLPEKVQVGGSPLYRMERKLGKGGFGQVYVGRRVSPINPSDRTTGPGALEVALKFEHRSSKGCNYGPPYEWQVYNTLGGSHGVPRVHFKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTADEKKLFLVDLGLATRWRETTTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPMPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYQVGHKRGRLTIEEEEDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADARLAQHIDKGNEDGLFISSVASCQNLWALIMDAGTGFTAQVYELSPYFLHKEWIMEQWEKNFYISAIAGATNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTSMATSGSRWGVVMSRGAGFSEQVVELDFLYPSEGIHRRWDNGFRITATAATWDQAAFVLSVPRRKPVDETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0347 704 ProSiteProfiles Protein kinase domain profile. 136 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0347 704 SUPERFAMILY Protein kinase-like (PK-like) 136 419 IPR011009 -
Vvi9g0347 704 SMART serkin_6 136 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0347 704 PANTHER CASEIN KINASE-RELATED 136 668 - -
Vvi9g0347 704 Pfam Protein kinase domain 136 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0347 704 MobiDBLite consensus disorder prediction 1 129 - -
Vvi9g0347 704 MobiDBLite consensus disorder prediction 93 117 - -
Vvi9g0347 704 CDD STKc_CK1 136 413 - -
Vvi9g0347 704 FunFam casein kinase 1-like protein HD16 109 460 - -
Vvi9g0347 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vvi9g0347 704 Gene3D Transferase(Phosphotransferase) domain 1 105 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0347 Vvi-Chr9 3371247 3378289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0347 256 413 MAP Kinase Kinase Kinase AT5G50180 26.875 2.80e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi9g0347 Pkinase 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0347 - - vvi:100253221 1436.78