Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0340 ATGACTCGTCGCTGCTCACACTGTAGCACCAACGGACACAACTCCCGCACCTGCCCCTCCCGCGGTGGAGGCGCAGTCGCCGGCGGTATCGGCGGAGTGAAGTTGTTCGGAGTTCGGCTCACAGATGGCTCCATCATCAAGAAGAGCGCAAGTATGGGTAGCCTCTCCTCCGCTCACTACCACTCCTCCTCCTCCGCCGCGGCTTCTCCGAACCCTAGCTCGCCGTCCTCCGACCCCCTCCGCGACGCGATTCACGAGCCCGACGGCTACTTATCGGACGATCCTGGCCAGGCCACTTGCTCCTCCAATCGCCGTGGTGAACGGAAGAAAGGTGTACCTTGGACAGAAGAGGAGCACCGGCTATTCTTATTTGGTCTCCAGAGGTTGGGTAAAGGAGACTGGCGTGGGATATCACGTAACTATGTCATTTCAAGAACTCCTACCCAGGTAGCAAGTCATGCCCAGAAGTATTTCATTCGGCAGAGTAATGCTACCCGAAGAAAGAGGCGTTCCAGCCTTTTTGATATGGTTCCAGACATGGTCACAGATACACCTCCTGTGCCAGAAGAACAGTTCTTGGTCCCGACTTCTCAGACTGGAGAAACTGACAATGCAAGCTCAGTACCCTCTCTAAATCTCTCACTTAACATGGAATTCGAACCCATGGAAACAATTTCCCAAGAGACGGTTAAAGAAGCTGAAGAAGCTGAAGAAACTGTGATACCACGTAGTGAACTCCCACCAGTGGTTCCTGCATTCTTCCCAGGTTATCTACCCGTCCCATTTCCATTTTGGCCACCAAATGCAGCTTCAGCCGAGGAAGAGAAGGAATCCGAGTCATCTCATCAAGTCCTCAAGCCAATTCCAGTCCTTCCCAAGGAACCTGTCAATGTAGATGAACTCGTGGGCATGTCTCAGCTCAGTCTTGGAGAGATCAACAACGGCCATATAGATTCCTCACCGCTCTCCCTAAAATTACTAGGGGCACCATCAAGGCAGTCGGCATTCCACACAAACACTTCAGTGGGTGGATCGGAATTAGGCAAGGGCAAGAACAGTGTAGTCCAAGCAGTTTGA 1077 0.5255 MTRRCSHCSTNGHNSRTCPSRGGGAVAGGIGGVKLFGVRLTDGSIIKKSASMGSLSSAHYHSSSSAAASPNPSSPSSDPLRDAIHEPDGYLSDDPGQATCSSNRRGERKKGVPWTEEEHRLFLFGLQRLGKGDWRGISRNYVISRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMVTDTPPVPEEQFLVPTSQTGETDNASSVPSLNLSLNMEFEPMETISQETVKEAEEAEETVIPRSELPPVVPAFFPGYLPVPFPFWPPNAASAEEEKESESSHQVLKPIPVLPKEPVNVDELVGMSQLSLGEINNGHIDSSPLSLKLLGAPSRQSAFHTNTSVGGSELGKGKNSVVQAV* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0340 358 FunFam transcription factor MYB1R1 112 163 - -
Vvi9g0340 358 CDD SANT 113 158 IPR001005 -
Vvi9g0340 358 MobiDBLite consensus disorder prediction 61 112 - -
Vvi9g0340 358 SUPERFAMILY Homeodomain-like 108 163 IPR009057 -
Vvi9g0340 358 Gene3D - 112 163 - -
Vvi9g0340 358 ProSiteProfiles Myb-like domain profile. 106 158 IPR001005 -
Vvi9g0340 358 ProSiteProfiles SANT domain profile. 114 162 IPR017884 -
Vvi9g0340 358 SMART sant 110 160 IPR001005 -
Vvi9g0340 358 MobiDBLite consensus disorder prediction 1 24 - -
Vvi9g0340 358 Pfam Myb-like DNA-binding domain 113 158 IPR001005 -
Vvi9g0340 358 PANTHER TRANSCRIPTION FACTOR KUA1 3 290 - -
Vvi9g0340 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 162 IPR017930 -
Vvi9g0340 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 109 161 IPR006447 GO:0003677
Vvi9g0340 358 MobiDBLite consensus disorder prediction 337 358 - -
Vvi9g0340 358 MobiDBLite consensus disorder prediction 1 18 - -
Vvi9g0340 358 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0340 Vvi-Chr9 3279905 3283862 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi9g0340 Myb_DNA-binding 6.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0340 - - vvi:100241227 656.366