Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0333 ATGCCCTTTGGTCAGATTGAACAAAAGGGTGTACCTTGGACAGAAGAGGAGCACCGGCTATTCTTATTTGGTCTCCAGAGGTTGGGTAAAGGAGACTGGCGTGGGATATCACGTAACTATGTCATTTCAAGAACTCCTACCCAGGTAGCAAGTCATGCCCAGAAGTATTTCATTCGGCAGAGTAATGCTACCCGAAGAAAGAGGCGTTCCAGCCTTTTTGATATGGTTCCAGACATGGTCACAGATACACCTCCTGTGCCAGAAGAACAGTTCTTGGTCCCGACTTCTCAGACTGGAGAAACTGACAATGCAAGCTCAGTACCCTCTCTAAATCTCTCACTTAACATGGAATTCGAACCCATGGAAACAATTTCCCAAGAGACGGTTAAAGAAGCTGAAGAAGCTGAAGAAACTGTGATACCACGTAGTGAACTCCCACCAGTGGTTCCTGCATTCTTCCCAGGTTATCTACCCGTCCCATTTCCATTTTGGCCACCAAATGCAGCTCCAGCCGAGGAAGAGAAGGAATCCGAGTCATCTCATCAAGTCCTCAAGCCAATTCCAGTCCTTCCCAAGGAACCTGTCAATGTAGATGAACTCGTGGGCATGTCTCAGCTCAGTCTTGGAGAGATCAACAACGGCCATATAGATTCCTCACCGCCCTCCCTAAAATTACTAGGGGCACCATCAAGGCAGTCGGCATTCCACACAAACACTTCAGTGGGTGGATCGGAATTAGGCAAGGGCAAGAACAGTGTAGTCCAAGCAGTTTGA 774 0.4793 MPFGQIEQKGVPWTEEEHRLFLFGLQRLGKGDWRGISRNYVISRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMVTDTPPVPEEQFLVPTSQTGETDNASSVPSLNLSLNMEFEPMETISQETVKEAEEAEETVIPRSELPPVVPAFFPGYLPVPFPFWPPNAAPAEEEKESESSHQVLKPIPVLPKEPVNVDELVGMSQLSLGEINNGHIDSSPPSLKLLGAPSRQSAFHTNTSVGGSELGKGKNSVVQAV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0333 257 Gene3D - 11 62 - -
Vvi9g0333 257 NCBIfam myb-like DNA-binding domain, SHAQKYF class 9 60 IPR006447 GO:0003677
Vvi9g0333 257 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
Vvi9g0333 257 SMART sant 9 59 IPR001005 -
Vvi9g0333 257 MobiDBLite consensus disorder prediction 229 257 - -
Vvi9g0333 257 CDD SANT 12 57 IPR001005 -
Vvi9g0333 257 ProSiteProfiles SANT domain profile. 8 61 IPR017884 -
Vvi9g0333 257 PANTHER TRANSCRIPTION FACTOR KUA1 8 189 - -
Vvi9g0333 257 MobiDBLite consensus disorder prediction 231 246 - -
Vvi9g0333 257 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Vvi9g0333 257 FunFam transcription factor MYB1R1 11 62 - -
Vvi9g0333 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Vvi9g0333 257 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0333 Vvi-Chr9 3223397 3224630 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi9g0333 Myb_DNA-binding 3.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0333 - - vvi:100256666 439.113