Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi9g0333 | ATGCCCTTTGGTCAGATTGAACAAAAGGGTGTACCTTGGACAGAAGAGGAGCACCGGCTATTCTTATTTGGTCTCCAGAGGTTGGGTAAAGGAGACTGGCGTGGGATATCACGTAACTATGTCATTTCAAGAACTCCTACCCAGGTAGCAAGTCATGCCCAGAAGTATTTCATTCGGCAGAGTAATGCTACCCGAAGAAAGAGGCGTTCCAGCCTTTTTGATATGGTTCCAGACATGGTCACAGATACACCTCCTGTGCCAGAAGAACAGTTCTTGGTCCCGACTTCTCAGACTGGAGAAACTGACAATGCAAGCTCAGTACCCTCTCTAAATCTCTCACTTAACATGGAATTCGAACCCATGGAAACAATTTCCCAAGAGACGGTTAAAGAAGCTGAAGAAGCTGAAGAAACTGTGATACCACGTAGTGAACTCCCACCAGTGGTTCCTGCATTCTTCCCAGGTTATCTACCCGTCCCATTTCCATTTTGGCCACCAAATGCAGCTCCAGCCGAGGAAGAGAAGGAATCCGAGTCATCTCATCAAGTCCTCAAGCCAATTCCAGTCCTTCCCAAGGAACCTGTCAATGTAGATGAACTCGTGGGCATGTCTCAGCTCAGTCTTGGAGAGATCAACAACGGCCATATAGATTCCTCACCGCCCTCCCTAAAATTACTAGGGGCACCATCAAGGCAGTCGGCATTCCACACAAACACTTCAGTGGGTGGATCGGAATTAGGCAAGGGCAAGAACAGTGTAGTCCAAGCAGTTTGA | 774 | 0.4793 | MPFGQIEQKGVPWTEEEHRLFLFGLQRLGKGDWRGISRNYVISRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMVTDTPPVPEEQFLVPTSQTGETDNASSVPSLNLSLNMEFEPMETISQETVKEAEEAEETVIPRSELPPVVPAFFPGYLPVPFPFWPPNAAPAEEEKESESSHQVLKPIPVLPKEPVNVDELVGMSQLSLGEINNGHIDSSPPSLKLLGAPSRQSAFHTNTSVGGSELGKGKNSVVQAV* | 258 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi9g0333 | 257 | Gene3D | - | 11 | 62 | - | - | |
Vvi9g0333 | 257 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 9 | 60 | IPR006447 | GO:0003677 | |
Vvi9g0333 | 257 | SUPERFAMILY | Homeodomain-like | 6 | 62 | IPR009057 | - | |
Vvi9g0333 | 257 | SMART | sant | 9 | 59 | IPR001005 | - | |
Vvi9g0333 | 257 | MobiDBLite | consensus disorder prediction | 229 | 257 | - | - | |
Vvi9g0333 | 257 | CDD | SANT | 12 | 57 | IPR001005 | - | |
Vvi9g0333 | 257 | ProSiteProfiles | SANT domain profile. | 8 | 61 | IPR017884 | - | |
Vvi9g0333 | 257 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 8 | 189 | - | - | |
Vvi9g0333 | 257 | MobiDBLite | consensus disorder prediction | 231 | 246 | - | - | |
Vvi9g0333 | 257 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
Vvi9g0333 | 257 | FunFam | transcription factor MYB1R1 | 11 | 62 | - | - | |
Vvi9g0333 | 257 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Vvi9g0333 | 257 | Pfam | Myb-like DNA-binding domain | 12 | 57 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi9g0333 | Vvi-Chr9 | 3223397 | 3224630 | Proximal |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Vvi9g0333 | Myb_DNA-binding | 3.8e-10 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi9g0333 | - | - | vvi:100256666 | 439.113 |