LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g0323	ATGTTGAGTACTGAGTTGGTCCGTTCTTACTTCTCAGTCCCATCTTCCTTTCAGTCTTTCTCTCGTTGCCAGTCACGCTTACCCAGAGAGAGAGAGAGGGAGAGAGGGAGAGGCCAAAACGAAGCTTCACCCCCTCAAAACCACACACTTCTTCCCCAATTACGACGTCGTTTCCCACCCATGACTCCTGTACCGTCATCCCTCTTCGCCACTCTCTCCGTCTCTTTGTTCTTCTTCGTCTTTCAAATGGTCTCTGTACATTCGCTATCCACCACACCCATGAACTGTACGGACACGTCTCGCCTCTGCACCTCCTTCTTGGCCTTCAAGCCCACCCAGAATCAGACTCTCGCTCTGATCCAGTCCATGTACGACGTCCTCCCCAAGGACCTCACCGTTGAAGCCACCGACCCCAACTACGTCTTCTTCAAAAAGAACTGCTCCTGTGAGTCTTATACGAAGAAGTACTTCACCAACACCACCTTCACTGTGAGGGCCAACGATGGGTTCATCAGCGACCTGGTGGCGGAGGCCTACGGCGGCCTTGCGGTGGTCCCCGGGTACCGACGGCGAGCCAGGGTCGGCGCGGTGGTCACGGTGAGGTTGTACTGTGGGTGTTCGATTGGGCTGTGGAATTATTTGATGAGCTATGTGATGAGAGATGGGGACAGCGTTGAATCTCTGGCGAGTAGGTTTGGGGTCAGTATGGGTAGTATCGAGGCAGTGAATGGGATTGATAATCCTGATAATGTTACTGTGGGTGCCCTTTATTATATACCGTTGAATTCAGTTCCTGGTGAGCCTTATCCTTTGGAGAATGCCGTTCCTCCTGCTCCTGTCCCTGCAACATCCAATAGTAACTTTTCAGTAGTTCAGGCGAATCATAAGGATCATGTTCCATATGGATGGATCATAGGGGGTTTGGGAGTTGGTCTTGCTCTGATAGCTGTACTTCTAGTTATATGTGTTTGTTTGAAATCATCAAGCTGTTTTGCTAAAGGCCGAGGAAGTCTTGCAAAAGATTCTGATGGGAAGAATCCCCATAAGTTTCAGATTCTTCGGACAAGAAGTTATTGTTGTGGTTCAGGAAGATATAGCTGCTGCAAATCTGCAGATGTGAAGCAAACTAATGGAGAATCTAGCAACCTCCAGATGAATATTCCTAAAGCTATAGGGACTGATGTATTTGACATGGAGAAGCCTGTGGTTTTCACATATGAAGAAATTCTGTCTTCAACTGATGGTTTCTCTGATTCAAATCTTCTGGGGCATGGAACATATGGTTCTGTGTATTATGGTGTTCTTCATGATCAGGAAGTTGCAATAAAAAAAATGACTGCTACAAAAACTAGAGAATTCATGTCAGAGATGAAAGTTCTGTGCAAGGTTCACCATACTAATTTGGTAGAATTGATTGGTTATGCGGCTAGTGATGATGAGCTCTTTCTTATTTATGAATATGCCCAAAAAGGTTCACTTAAAAGCCATTTACATGATCCTCAGAACAAAGGCCATACATCGCTTTCTTGGATCATGAGGGTTCAGATTGCACTTGATGCTGCTAGAGGGATCGAATACATCCATGAGCACACTAAAACTCACTATGTCCATCGAGATATTAAGACAAGCAATATCTTACTTGATGGTGCCTTCAGGGCAAAGATTTCAGATTTTGGGTTGGCAAAACTTGTTGGAAAGACTGGTGAAGGAGAAGCTTCAGCTACAAGAGTTGTTGGAACCTTTGGTTACCTGGCTCCAGAATACTTGAGTGATGGCCTGGCCACAACAAAAAGTGATGTATATGCCTTTGGCATTGTCCTTTTTGAGATAATTTCGGGGAAGGAGGCCGTTACACGAACTGAAGGCATGGTGATGAAAAATCCTGAAAGACGTTCACTGGCATCCATTATGTTAGCAGCTCTTCGGAACTCACCCAATTCCATGAGTATGTCAAGCATGAAAGATTGCATTGATCCTAATTTGATGGATTTGTATCCCCATGACTGTTTATACAAGATGGCTATGTTGGCGAAGCAATGTGTAGATCATGATCCCATTTTGCGGCCAGACATGAAGCAAGTTGTGATTTCGCTGTCACAGATCCTCTTATCCTCTGTTGAATGGGAGGCAACTCTTGCTGGGAACAGCCAAGTATTTAGTGGCCTTGTCCAAGGAAGATGA	2181	0.4553	MLSTELVRSYFSVPSSFQSFSRCQSRLPRERERERGRGQNEASPPQNHTLLPQLRRRFPPMTPVPSSLFATLSVSLFFFVFQMVSVHSLSTTPMNCTDTSRLCTSFLAFKPTQNQTLALIQSMYDVLPKDLTVEATDPNYVFFKKNCSCESYTKKYFTNTTFTVRANDGFISDLVAEAYGGLAVVPGYRRRARVGAVVTVRLYCGCSIGLWNYLMSYVMRDGDSVESLASRFGVSMGSIEAVNGIDNPDNVTVGALYYIPLNSVPGEPYPLENAVPPAPVPATSNSNFSVVQANHKDHVPYGWIIGGLGVGLALIAVLLVICVCLKSSSCFAKGRGSLAKDSDGKNPHKFQILRTRSYCCGSGRYSCCKSADVKQTNGESSNLQMNIPKAIGTDVFDMEKPVVFTYEEILSSTDGFSDSNLLGHGTYGSVYYGVLHDQEVAIKKMTATKTREFMSEMKVLCKVHHTNLVELIGYAASDDELFLIYEYAQKGSLKSHLHDPQNKGHTSLSWIMRVQIALDAARGIEYIHEHTKTHYVHRDIKTSNILLDGAFRAKISDFGLAKLVGKTGEGEASATRVVGTFGYLAPEYLSDGLATTKSDVYAFGIVLFEIISGKEAVTRTEGMVMKNPERRSLASIMLAALRNSPNSMSMSSMKDCIDPNLMDLYPHDCLYKMAMLAKQCVDHDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR*	727

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g0323	726	SUPERFAMILY	LysM domain	215	260	IPR036779	-
	Vvi9g0323	726	ProSitePatterns	Protein kinases ATP-binding region signature.	422	444	IPR017441	GO:0005524
	Vvi9g0323	726	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	535	547	IPR008271	GO:0004672\|GO:0006468
	Vvi9g0323	726	SUPERFAMILY	Protein kinase-like (PK-like)	398	698	IPR011009	-
	Vvi9g0323	726	SMART	serkin_6	416	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi9g0323	726	ProSiteProfiles	LysM domain profile.	215	259	IPR018392	-
	Vvi9g0323	726	MobiDBLite	consensus disorder prediction	22	56	-	-
	Vvi9g0323	726	MobiDBLite	consensus disorder prediction	25	39	-	-
	Vvi9g0323	726	Gene3D	Transferase(Phosphotransferase) domain 1	489	713	-	-
	Vvi9g0323	726	SMART	LysM_2	216	260	IPR018392	-
	Vvi9g0323	726	Pfam	Protein tyrosine and serine/threonine kinase	420	696	IPR001245	GO:0004672\|GO:0006468
	Vvi9g0323	726	Gene3D	LysM domain	213	266	IPR036779	-
	Vvi9g0323	726	Pfam	LysM domain	217	254	IPR018392	-
	Vvi9g0323	726	ProSiteProfiles	Protein kinase domain profile.	416	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi9g0323	726	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	78	720	IPR044812	GO:0019199\|GO:0045087
	Vvi9g0323	726	FunFam	PTI1-like tyrosine-protein kinase 3	488	712	-	-
	Vvi9g0323	726	FunFam	Kinase family protein	390	487	-	-
	Vvi9g0323	726	Gene3D	Phosphorylase Kinase; domain 1	390	487	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g0323	Vvi-Chr9	3105707	3115819	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g0323	93	726	Receptor kinase-like Gene Family	AT1G51940	68.847	0.0	860

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Vvi9g0323		PK_Tyr_Ser-Thr	3.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g0323	-		-	vvi:100256626	1267.68