Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0320 ATGGAGGGGTGTTCAAGGAAGGATGAGGTATGTCCACAGCTGCTAGATTTGATCTCCAAAGACAGAGAATGGGTTCTGAAGAGTGGTGAAGGGAGAAGCCATGGCTCTCCAGAGGAGAAAAAGCTTGAGCTGAGGCTTGGTCCTCCAGGTGAGGACTGGACCATCAAAGATAACACCAACAATAATAACTACAGAGAAAGGGACGAATCCCTTCGGTATCTCAGGTACTTATCTTCCATGGCCTCCATGACCCACAACTGCAGCAACAACAACAACAACAGTAATATCATCAACAATACCACCACTTCTTGTGGAAAGAGAGGTTTCCTAGAGACAGTTGAGAGGAACACAGGAGAGGAAGGTTGGATCATGAATAGCAATGGAAACCAAAACCAGAAACAAGCTGCTAATAATACCAATAATAATGGTGTGTTGCCCTCTCCCTGGTCTTCTTCAGGTTACCAGGTTAAGACCCAACAGCAGCAACAGCAGACAAAAGCTTCATTTCTTCAGTTCCAATCAAGCCCTCCTGTTATTACAAAGGAATCCTCACAGCCCTGTTGCACTAAAGTAGTAGACTTGCAGAATACAGAAAAGAAGGCATTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGATCTGCGCCTACTGCAGTTGTGGGGTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGTAGTAGCTCTTCGAAACCGGCTAACGAGTCCCAAGATGTGGTCCCAAACAAGATTGCGAGTGAAAAACCGGTCGAAGTTGGCAAAAAGGGTCTTTTTGTGAAGATCAATATGGATGGAGTTCCAATTGGGAGGAAGGTGGACCTTACAGCATATGACAGCTATGAAAAACTTTCATCTGCTGTTGATGAGCTATTCAGGGGCCTTCTAGCAGCTCAAAGAGATTCCTCTGCTGGTGGAATCCAGACCAAGCATGAGGAAGAGAAAACTATTACTGGTTTGCTCGATGGGAGTGGCGAATATACGCTTGTTTACGAGGATAACGAAGGAGACAGAGTCCTTGTTGGGGATGTCCCATGGCACATGTTCGTGAACACGGTGAAGAGGTTGCGCGTGTTGAAGAGCTCTGAACTTTCTGCTCTATGCCTTGGTAGCAGCAAGCAAGAAAAGGCACCACTTGACTCTGCATTGAAATGA 1191 0.4593 MEGCSRKDEVCPQLLDLISKDREWVLKSGEGRSHGSPEEKKLELRLGPPGEDWTIKDNTNNNNYRERDESLRYLRYLSSMASMTHNCSNNNNNSNIINNTTTSCGKRGFLETVERNTGEEGWIMNSNGNQNQKQAANNTNNNGVLPSPWSSSGYQVKTQQQQQQTKASFLQFQSSPPVITKESSQPCCTKVVDLQNTEKKAFSPASANTAVPNSSQKRSAPTAVVGWPPIRSFRKNLASSSSSKPANESQDVVPNKIASEKPVEVGKKGLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKHEEEKTITGLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSALCLGSSKQEKAPLDSALK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0320 396 FunFam Auxin-responsive protein 264 384 - -
Vvi9g0320 396 SUPERFAMILY CAD & PB1 domains 268 370 - -
Vvi9g0320 396 Gene3D - 264 385 - -
Vvi9g0320 396 MobiDBLite consensus disorder prediction 28 61 - -
Vvi9g0320 396 MobiDBLite consensus disorder prediction 203 221 - -
Vvi9g0320 396 MobiDBLite consensus disorder prediction 203 223 - -
Vvi9g0320 396 MobiDBLite consensus disorder prediction 28 47 - -
Vvi9g0320 396 Pfam AUX/IAA family 42 380 IPR033389 -
Vvi9g0320 396 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 376 IPR003311 GO:0005634|GO:0006355
Vvi9g0320 396 ProSiteProfiles PB1 domain profile. 269 373 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0320 Vvi-Chr9 3076002 3078359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0320 273 382 B3 DNA Binding Superfamily AT4G23980 32.727 8.83e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi9g0320 AUX_IAA 5e-74 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0320 K14484 - vvi:100266914 722.235