Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0315 ATGGGAAGAGCTACAAGGTGGTTGAGAGGCTTGTTGGGGATGAAGAAAGACAAGGAACAGGTGGAGAATTCCACCGCTGGTGACCGGAAGGAGAAGAAAAGGTGGAGTTTTGCCAAGCCAGGGAGGGATACTTCTGGTGTGGGTCAGAACCCAGTCAACTTTCCGGCCAACATTCCGGTTGATTCCGCTTGGTTGAGATCTTACATTTCTGAGACAGAGAAAGAGCAGAACAAGCACGCAATTGCTGTGGCTGCAGCCACCGCAGCCGCTGCGGATGCTGCGGTGGCCGCAGCACAGGCTGCAGTGGCTGTGGTGAGGCTCACAAGCCATGGCAGAGGAACCCTCTTTGGTGGAGGCAGAGACAGGTGGGCTGCAACCAAGATTCAGACTGTTTTTAGGGGATATTTGGCCCGAAAGGCGCATAGAGCTTTGAAAGGATTGGTGAAGTTGCAGGCTCTTGTTAGGGGTTTTCTTGTTCGAAAGCGGGCTGCCGCAACCCTTCATAGTATGCAAGCTCTTATAAGGGCTCAGGCTGCTGTTCGATCCCAAAGAACTCTCCGTGCCCGCAACAAAGAAAACAGATTTCCACCAGAAATGAGGCCTAGAAGATCCATTGAAAGGTTTGAGGAAACCAGAAGTGAATTCCACAGTAAGAGGATGTCAACATCTTTTGAGACTTCAGTTAATGCATTTGATGAAAGCCCAAAGATCGTCGAAATCGATACATTCAAGCCCAAGTCAAGATCCCGCAGAATGATGAATACTTCAACCTCAGATTCAGGCGAAGACCCGCCATACCTAACACTCTCATCACCTCTTCCATGTCCAGTTCCAGCCCGACTCTCCATACCCGATTGCAGAAACTTTCAAGACTTCGAATGGTGCTTCACTGGCGACGAATGTAGGTTCTCCACTGCCCAAAGCACTCCTCGGCTTGCAAACACTAGCCGAGCAGTGGCCCCAGTTACACCAGCCAAGAGCGTATGTGGGGACAGCTTCTTCCGGCCTTACTCCAACTTCCCCAACTATATGGCCAACACTCAATCATTCAAGGCCAAACTGAGGTCTCACAGTGCCCCAAAGCAAAGACCTGAGCCTGGCCCCAAAAGGCGGTTTTCCCTCAATGAAATAATGGCATCAAGGACTAGCCTAAGCGGGGTTCGAATGCAGAGATCATGTTCCCAAGTTCAAGAAGCTTTGAATTTTTAA 1209 0.5029 MGRATRWLRGLLGMKKDKEQVENSTAGDRKEKKRWSFAKPGRDTSGVGQNPVNFPANIPVDSAWLRSYISETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFGGGRDRWAATKIQTVFRGYLARKAHRALKGLVKLQALVRGFLVRKRAAATLHSMQALIRAQAAVRSQRTLRARNKENRFPPEMRPRRSIERFEETRSEFHSKRMSTSFETSVNAFDESPKIVEIDTFKPKSRSRRMMNTSTSDSGEDPPYLTLSSPLPCPVPARLSIPDCRNFQDFEWCFTGDECRFSTAQSTPRLANTSRAVAPVTPAKSVCGDSFFRPYSNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKRRFSLNEIMASRTSLSGVRMQRSCSQVQEALNF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0315 402 MobiDBLite consensus disorder prediction 246 267 - -
Vvi9g0315 402 Gene3D - 63 146 - -
Vvi9g0315 402 Pfam Protein of unknown function (DUF4005) 317 385 IPR025064 -
Vvi9g0315 402 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Vvi9g0315 402 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Vvi9g0315 402 MobiDBLite consensus disorder prediction 16 39 - -
Vvi9g0315 402 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Vvi9g0315 402 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Vvi9g0315 402 MobiDBLite consensus disorder prediction 249 265 - -
Vvi9g0315 402 MobiDBLite consensus disorder prediction 16 51 - -
Vvi9g0315 402 PANTHER IQ-DOMAIN 5-RELATED 1 376 - -
Vvi9g0315 402 SMART iq_5 120 142 IPR000048 GO:0005515
Vvi9g0315 402 SMART iq_5 143 164 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0315 Vvi-Chr9 3038637 3040592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0315 1 389 IQD Protein Family AT3G16490 56.965 4.45e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0315 - - vvi:100241183 766.148