Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0309 ATGGATTGTGTGAGCCCAATCTTGGACGTCGCCACCCGCTTGTGGGATTGCACCGCCAAGCGTGTAGTTTATATTCGTGAGCTTGAAAAAAATCTCAACTCTCTGGAGCGCTTGACGAAGGAACTGAGCAACTTAAGAACGGATGTGATGGCAGAAGTTGAGCGTGAGGAGAAGGAGGAGGTACCACAGCGTAGGCGTAAAAATGAAGTGGGTGGTTGGCTCAGCGCTGTACAAGCCATGGAAGAACAAGTGGAAGAAATATTGCAAAATGGGCGTCAAGAAATCCAACAGAAATGTCTCGGAACCTGTCCCAAGAATTGTAGGTCAAGATACAGGCTGGGGAAGACTGTGACTGAAAAGATTAATGCTGTGACTGAATTAACGGACAAAGGGCATTTTGATGTTGTGACTGATAGGTTGCCTCGTGCTCCGGTGGATGAGAGGCCGATGGGGAAGACTGTGGGCTTAGACTTGATGTTCGAGAAGGTTCGGAGATGCCTGGAAGATGAGCAAGTAAGAAGTATTGGGTTGTATGGAATTGGGGGTGCTGGAAAAACGACCCTCTTGAAGAAAATCAATAATGAGTATTTTGGTAGAAGTAACGATTTTGATGTGGTGATATGGGTAGTGGTGTCGAAATCAATCAGCATAGAGAAAATTCAAGAAGTGATTCTGAAGAAATTAACGATCCCAGAGCACAACTGGAAGAGTAGTACCAAGGAGGAGAAGGCTGCAGAAATTTTCAAGTTGTTGAAAGCCAAAAACTTTGTGATATTGCTTGATGATATGTGGGAGCGACTCGATCTCTTGGAGGTGGGGATCCCTGATTTGAGTGATCAAACGAAGTCCAGAGTAGTACTACTCACTACGAGATCTGAACGAGTATGCGATGAAATGGAAGTTCATAAGAGGATGAGGGTAGAGTGTTTGACACCGGATGAAGCATTTTCTCTGTTCTGTGATAAGGTTGGTGAGAATATCCTGAATTCACATCCGGATATAAAAAGGCTTGCTAAGATTGTTGTTGAAGAATGTGAAGGACTGCCTCTTGCCCTCGTCGTCATTGGGCGATCAATGGCTAGCAGGAAAACTCCTCGGGAATGGGAGCAAGCATTACAAGTGCTGAAGAGTTACCCAGCAGAGTTTTCAGGTATGGGAGATCATGTATTTCCAATTTTGAAATTCAGTTACGATCACTTGGACAATCATACCATCAAATCATGTTTCCTATATTGTTCTATATTCCCTGAAGACAGTATAATTGAGAATGAAGAACTCATAGATCTTTGGATCGGGGAGGGGTTTGTAAACAAATTTGCTGATGTACACAAAGCTCGCAATCAAGGAGATGGGATTATTAGAAGCTTAAAACTTGCGTGTCTCTTGGAAGGTGATGTATCGGAAAGCACTTGTAAGATGCATGATGTGATCCGTGACATGGCTCTTTGGTTATCATGTGAATCTGGGGAAGAAAAGCACAAAAGTTTTGTACTAAAACATGTTGAGTTGATTGAAGCATATGAAATTGTGAAATGGAAAGAAGCTCAACGGATTTCACTATGGCATTCTAATATCAATGAAGGACTCTCTCTATCACCCCGTTTCCTCAATCTCCAAACTTTGATTTTGAGAAATAGTAACATGAAGTCACTTCCAATTGGATTCTTCCAATCCATGCCTGTCATAAGAGTTTTGGATTTGTCAGACAATAGAAATTTAGTGGAGTTGCCTTTGGAGATTTGCAGATTAGAGAGTTTGGAATATCTGAATCTAACAGGGACGAGTATAAAAAGGATGCCTATAGAACTGAAGAATTTGACAAAACTGAGGTGTTTGATGTTAGACCATGTAGTGGCGCTTGAAGTAATTCCATCAAATGTGATATCTTGCCTTCCAAATTTGCAGATGTTTAGAATGCTGCACGCCTTGGATATTGTAGAATATGATGAAGTTGGAGTGTTGCAGGAGCTGGAGTGCTTGGAATACCTCAGTTGGATAAGTATCACCTTACTTACAGTCCCAGCTGTTCAAATATATCTCACCTCCTTGATGCTGCAAAAGTGCGTACGAGATCTATGCTTGATGACGTGCCCAGGTTTGAAGGTGGTGGAGCTGCCACTTTCGACTTTGCAAACACTCACTGTGCTTCGATTTGAATATTGTAATGATTTGGAACGTGTTAAAATAAATATGGGACTGTCTCGAGGTCATATCTCAAACTCAAACTTCCACAACCTTGTTAAGGTGTTTATTATGGGATGTCGATTCTTGAACCTGACTTGGCTTATTTATGCTCCAAGCCTTGAGTTCCTGTCAGTTCGTGCTAGTTGGGAAATGGAAGAAATTATAGGGAGTGATGAGTATGGAGACTCAGAAATTGACCAACAAAATCTCAGCATATTCTCAAGACTTGTGACGTTACAGTTGGAAGATCTCCCAAATCTGAAGAGTATCTACAAGCGAGCTTTGCCATTTCCTTCCCTCAAAGAGATCAATGTGGGTGGTTGTCCAAATCTAAGGAAATTGCCATTGAATTCCAATAATGCCACCAACACTTTAAAAGAAATTGCGGGGCATCCAACCTGGTGGGAGCAGTTGGAGTGGGAGGATGACAACCTCAAGCGCATTTGCACTCCGTATTTCAAAAAAAGGTATTAG 2658 0.421 MDCVSPILDVATRLWDCTAKRVVYIRELEKNLNSLERLTKELSNLRTDVMAEVEREEKEEVPQRRRKNEVGGWLSAVQAMEEQVEEILQNGRQEIQQKCLGTCPKNCRSRYRLGKTVTEKINAVTELTDKGHFDVVTDRLPRAPVDERPMGKTVGLDLMFEKVRRCLEDEQVRSIGLYGIGGAGKTTLLKKINNEYFGRSNDFDVVIWVVVSKSISIEKIQEVILKKLTIPEHNWKSSTKEEKAAEIFKLLKAKNFVILLDDMWERLDLLEVGIPDLSDQTKSRVVLLTTRSERVCDEMEVHKRMRVECLTPDEAFSLFCDKVGENILNSHPDIKRLAKIVVEECEGLPLALVVIGRSMASRKTPREWEQALQVLKSYPAEFSGMGDHVFPILKFSYDHLDNHTIKSCFLYCSIFPEDSIIENEELIDLWIGEGFVNKFADVHKARNQGDGIIRSLKLACLLEGDVSESTCKMHDVIRDMALWLSCESGEEKHKSFVLKHVELIEAYEIVKWKEAQRISLWHSNINEGLSLSPRFLNLQTLILRNSNMKSLPIGFFQSMPVIRVLDLSDNRNLVELPLEICRLESLEYLNLTGTSIKRMPIELKNLTKLRCLMLDHVVALEVIPSNVISCLPNLQMFRMLHALDIVEYDEVGVLQELECLEYLSWISITLLTVPAVQIYLTSLMLQKCVRDLCLMTCPGLKVVELPLSTLQTLTVLRFEYCNDLERVKINMGLSRGHISNSNFHNLVKVFIMGCRFLNLTWLIYAPSLEFLSVRASWEMEEIIGSDEYGDSEIDQQNLSIFSRLVTLQLEDLPNLKSIYKRALPFPSLKEINVGGCPNLRKLPLNSNNATNTLKEIAGHPTWWEQLEWEDDNLKRICTPYFKKRY* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0309 885 Coils Coil 77 97 - -
Vvi9g0309 885 Coils Coil 25 55 - -
Vvi9g0309 885 Gene3D - 309 396 IPR042197 -
Vvi9g0309 885 Gene3D Ribonuclease Inhibitor 508 678 IPR032675 -
Vvi9g0309 885 FunFam Probable disease resistance protein At5g66910 309 396 - -
Vvi9g0309 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 412 IPR027417 -
Vvi9g0309 885 Gene3D - 397 482 IPR036388 -
Vvi9g0309 885 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 33 843 - -
Vvi9g0309 885 Gene3D - 142 306 IPR027417 -
Vvi9g0309 885 SMART AAA_5 171 314 IPR003593 GO:0016887
Vvi9g0309 885 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515
Vvi9g0309 885 Gene3D Ribonuclease Inhibitor 690 859 IPR032675 -
Vvi9g0309 885 Pfam NB-ARC domain 159 398 IPR002182 GO:0043531
Vvi9g0309 885 FunFam Probable disease resistance protein At1g63360 397 483 - -
Vvi9g0309 885 PRINTS Disease resistance protein signature 174 189 - -
Vvi9g0309 885 PRINTS Disease resistance protein signature 250 264 - -
Vvi9g0309 885 PRINTS Disease resistance protein signature 557 573 - -
Vvi9g0309 885 PRINTS Disease resistance protein signature 345 359 - -
Vvi9g0309 885 FunFam Probable disease resistance protein At1g61300 136 304 - -
Vvi9g0309 885 SUPERFAMILY L domain-like 467 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0309 Vvi-Chr9 3004233 3006890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0309 172 481 WRKY Transcription Factor Family AT5G45050 23.492 5.54e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0309 - K13459 vvi:104880229 1747.25