Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0294 ATGGCGGCAATGCTGGTGTCTCCGCCACCGCCACCTCAGCTTCTACATCCGCCGCCTCCGTCGCCGGGATTTGAGCTGCACAAGGCGGCGCTTTACGTGGGGGATCTGGATCCGGAGGTGTCGGAGGTTGAGCTGGTGGACGTCTTCTCCGGGATGGGTCCTCTGGTCTCCGTTCGCCTCTGCAGAGACTCACTCTCCGGAAAGTCCCTTTGCTATGCTTATGTCAACTTCTTCCATCCCTCCGATGCTTCTAAGGCTTTGGCATGTCTTAACCACACTAAACTGATGGGGAAACCCATGAGGATAATGTGGTCTCACAGAGACCCTCTTCCAAGAAAGACTGGTCTTGCCAATCTTTTTGTCAAGAACCTCGATCCTTCAATCAACAGTGCTTCTCTGCAGGACATTTTCTGCAAGTTTGGCAATATACTCTCTTGCAAGGTGGCGGAAGAAAATGGGAAGAGTAAATGTTTTGGGTTTGTTCAGTTTGATTCGGATGACTCGGCCACTGCTGCTCTTAATGCTCTAAATGATACAATGCTTGACGGGAAAAAGTTATTTGTGTCCAAATTTGTCAAGAAATGTGAGAGGAAGGAGGCTTCTGAGGAAACAAAATTTACAAATGTGTATGTGAAAAATCTGGGTGAAGATTTGACAGAGGATATCATTCGAGACAAGTTCTCTGAATTTGGGAAAGTTGGCACTGTTGTTATCATGAAGGATGGCAATGGGAAATCCAGAGGGTTTGGTTTTGTGAACTTTGAGTCGCCAGATGAGGCTAAGAAGGCTGTGGAGGCCCTCAATGGTGCAATGCTAGGATCAAAGAAGTTGTTTGTTGGAAGGGCTCAGAAAAAAGCTGAAAGGCAGGAGCTTCTAAAACATGAGAAGGAGATGGTCAACTGCAATATTGGGAAGGAGAAGGCGTCAAACTTGTATGTGAAGAATCTTGATGCATCTGTTGATGACGACAAATTGCAAGAACATTTCAGCTCCTGTGGACAAATAACTTCTGCCAAAGTGATGCGACATGATAGTGGGCTCAGTAAAGGATTTGGTTTTGTATGCTTCTCAACTTCTGAAGAAGCACAGAAGGCTTTGACTACACTTAATGGAACCCTACTTCATGGAAGGTCTTTGTACATTGCTATGGCACAGCGTAAAGAAGATCGTCAGAGGGTACTGCGAGATTACTACTCACAATACCTCTTGCAGTATTATGGTCCTCATTTCCTTTCCTCTGGATCCAGTTCACCTGATTACTCTTTTGTTCCCTTCCCTCACCCAAATCCTACCCCACAGATTAATTCACCTCAGCCAATCATATGTCAACAGTTTGGTAGGAACCTTGGTGTGATGCGCCCTTTTGCCCCACAGAATTACCAGCAAAATTTTTCCACATTTGTAAGGAAACCCTCTGGTTTTATTTTGTGA 1431 0.4556 MAAMLVSPPPPPQLLHPPPPSPGFELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTKLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDRQRVLRDYYSQYLLQYYGPHFLSSGSSSPDYSFVPFPHPNPTPQINSPQPIICQQFGRNLGVMRPFAPQNYQQNFSTFVRKPSGFIL* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0294 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Vvi9g0294 476 FunFam Polyadenylate-binding protein 118 197 - -
Vvi9g0294 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Vvi9g0294 476 MobiDBLite consensus disorder prediction 1 20 - -
Vvi9g0294 476 SUPERFAMILY RNA-binding domain, RBD 17 114 IPR035979 GO:0003676
Vvi9g0294 476 CDD RRM3_I_PABPs 206 285 - -
Vvi9g0294 476 SUPERFAMILY RNA-binding domain, RBD 118 288 IPR035979 GO:0003676
Vvi9g0294 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Vvi9g0294 476 Gene3D - 15 110 IPR012677 -
Vvi9g0294 476 SMART rrm1_1 208 280 IPR000504 GO:0003723
Vvi9g0294 476 SMART rrm1_1 310 382 IPR000504 GO:0003723
Vvi9g0294 476 SMART rrm1_1 30 103 IPR000504 GO:0003723
Vvi9g0294 476 SMART rrm1_1 118 189 IPR000504 GO:0003723
Vvi9g0294 476 SUPERFAMILY RNA-binding domain, RBD 305 408 IPR035979 GO:0003676
Vvi9g0294 476 PANTHER RNA BINDING PROTEIN 30 94 - -
Vvi9g0294 476 Gene3D - 111 196 IPR012677 -
Vvi9g0294 476 Gene3D - 296 396 IPR012677 -
Vvi9g0294 476 Gene3D - 197 295 IPR012677 -
Vvi9g0294 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Vvi9g0294 476 FunFam Polyadenylate-binding protein 198 292 - -
Vvi9g0294 476 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 416 IPR006515 GO:0003723
Vvi9g0294 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Vvi9g0294 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Vvi9g0294 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Vvi9g0294 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 100 IPR000504 GO:0003723
Vvi9g0294 476 SMART rrm2_1 30 103 IPR003954 GO:0003676
Vvi9g0294 476 SMART rrm2_1 208 280 IPR003954 GO:0003676
Vvi9g0294 476 SMART rrm2_1 118 189 IPR003954 GO:0003676
Vvi9g0294 476 SMART rrm2_1 310 382 IPR003954 GO:0003676
Vvi9g0294 476 CDD RRM4_I_PABPs 309 386 - -
Vvi9g0294 476 FunFam Poly(A) binding protein cytoplasmic 1 like 302 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0294 Vvi-Chr9 2903493 2906826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0294 29 405 Eukaryotic Initiation Factors Gene Family AT3G16380 54.974 2.78e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0294 K13126 - vvi:100256670 933.324