Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0292 ATGGACAGTAGACCACCACTGGTTTGGCTCATCTTTGTCCTGGTTACCATCATGTCCTCAGGTTTCATAAGCATTGACTGTGGGATAGCTCCAGGTTCATCTTATACAGATGATAGAACCCAGATACATTACACTTCTGATGCAGAATTCACAGACACTGGAATCAATTATAATGTTTCCAGATGGGACTTCGGTTCAGAGCAAGAAAAGTTTCAAGTCAGGTACAAAGATGACGCTCTTGACCGCATTTGGAACTCCTACAAGAATGCTTTTTGGGAATCCATAACTGCAGGATTTGAAAGCTATTCCTACAGTGACAATCCCTTTAAACTTCCGGGAATAGTCATGTCTACTGCTGCAACACCTAAAAATGAAAGCGAACCCTTGAGCTTCTTCCTGGATATGGATTATCCTTCTCAAAGATTTTATTTGTTCATGCATTTTTCTGAGGTTTTGCAACTCCAGGGCAACCAGTCCAGAGTATTTACCATCTGGCTGAATGGCACCTTATGGAACGATCCTGTGGTTCCCAAACGCTGTAGCTCTACCAGAATATTTAGAACAAATTCTGTAAAGGGAAGTAGATTGTTATTTTCACTTGTGAAGACAGATGAATCCACGCTTCCCCCCATTATCAATGCCTTGGAAGTTTATGTGATAAAGGAATTCTCACAATCAACAACTGACCAAGATGATGTTGAGGCTATCAAGAAGATTAAATCAGTGTACATGGTGAGGAGAAACTGGCAAGGAGATCCATGTCTTCCAATGGATTACCAATGGGATGGCCTGAAATGCAGCAATAATGGTTCCCCCACTTTAATATCATTGAACCTCTCATATAGCAATTTGACAGGAAAGATACATCCTTCATTTTCCAATCTCAAATCATTACAAACTCTGGATTTATCTCACAATAACTTGACTGGATCAGTGCCAGAGTTCTTAACTGAACTGCCATCTCTAACGTTCCTTAATTTAGCAGGGAACAACTTGAAAGGTTCAGTTCCTCAGGGGCTTATGGAGAAGTCTCAGAATGGCACATTGTACTTGAGTCTTGGAGAAAATCCAAATCCTTGTGTGTCAGTCTCATGCAAAGGAAAGCAAAACAAGAACTTCGTTGTTCCAGCTCTCGCATCCGTTATATCAGTTCTGGTCCTGTTCCTTCTAATTGCTGTTGGTATCATTTGGAACTTCAGAAGGAAAGAAGACAGGTATTTTCTTTCTTTCATTCCCCTAGATTTCATGGTCACCAGAGAAGGATCATTGAAGTCAGGGAACTCAGAGTTCACTTACTCTGAGCTTGTGACTATTACCCACAACTTCAGTTCCACCATTGGACAAGGAGGATTTGGAAATGTTCATCTAGGCACTCTGGTAGATGGCACTCAAGTCACGGTCAAGCTGCGCTCGCAATCATCAATGCAAGGCCCCAGGGAATTTCAAGCTGAGGCAAAACTCTTGAAGAGAGTCCATCATAAAAACTTGGTTCGCCTTGCTGGGTATTGCAATGATGGTACAAACACGGCCCTCATTTATGAATATATGTCTAATGGAAACCTGAGACAGAGGTTGTCAGCGAGAGATACGGATGTTTTGTATTGGAAAGAGAGGCTTCAAATTGCAGTTGATGTAGCACAAGGATTGGAGTATCTGCACAATGGTTGCAAGCCACCAATAATCCACAGAGATGTGAAGACTTCCAACATACTATTAAACAAAAAACTGCAAGCTAAGATAGCTGATTTTGGGCTGTCCAGAGACCTTGCAATTGAAAGTGGCTCTCATGCATCAACTATTCCTGCAGGCACACCAGGATATCTGGATCCTGAGTATTACTCATCTGGAAATTTGAATAAAAGGAGCGATGTTTATAGCTTTGGGATTGTCTTGTTGGAGCTGATTACTGGCCTGCCTGCAATAATAACCCCTGGGAACATCCACATAGTTCAATGGATTAGTCCTATGCTTAAAAGAGGGGATATTCAGAACATTGTTGATCCAAGGCTACAAGGAGATTTCAACACCAATTCTGCCTGGAAAGCTCTAGAGACAGCCTTAGCATGTGTACCATCAACTGCAATTCAAAGGCCAGACATGAGCCATGTACTGGCAGACTTAAAGGATTGTTTGGAGATGGTGGGTCCCATGAGAACTCAGAGGATAGATAGCTACAAAATGGGATCAAGCAACTCCCTTAAAAGCTATGCGGTGGATCTTGAAGGTGAAATGGCTCCCCATGTTAGATAG 2250 0.4209 MDSRPPLVWLIFVLVTIMSSGFISIDCGIAPGSSYTDDRTQIHYTSDAEFTDTGINYNVSRWDFGSEQEKFQVRYKDDALDRIWNSYKNAFWESITAGFESYSYSDNPFKLPGIVMSTAATPKNESEPLSFFLDMDYPSQRFYLFMHFSEVLQLQGNQSRVFTIWLNGTLWNDPVVPKRCSSTRIFRTNSVKGSRLLFSLVKTDESTLPPIINALEVYVIKEFSQSTTDQDDVEAIKKIKSVYMVRRNWQGDPCLPMDYQWDGLKCSNNGSPTLISLNLSYSNLTGKIHPSFSNLKSLQTLDLSHNNLTGSVPEFLTELPSLTFLNLAGNNLKGSVPQGLMEKSQNGTLYLSLGENPNPCVSVSCKGKQNKNFVVPALASVISVLVLFLLIAVGIIWNFRRKEDRYFLSFIPLDFMVTREGSLKSGNSEFTYSELVTITHNFSSTIGQGGFGNVHLGTLVDGTQVTVKLRSQSSMQGPREFQAEAKLLKRVHHKNLVRLAGYCNDGTNTALIYEYMSNGNLRQRLSARDTDVLYWKERLQIAVDVAQGLEYLHNGCKPPIIHRDVKTSNILLNKKLQAKIADFGLSRDLAIESGSHASTIPAGTPGYLDPEYYSSGNLNKRSDVYSFGIVLLELITGLPAIITPGNIHIVQWISPMLKRGDIQNIVDPRLQGDFNTNSAWKALETALACVPSTAIQRPDMSHVLADLKDCLEMVGPMRTQRIDSYKMGSSNSLKSYAVDLEGEMAPHVR* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0292 749 SMART serkin_6 440 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0292 749 PANTHER OS07G0107800 PROTEIN-RELATED 58 711 - -
Vvi9g0292 749 Gene3D Transferase(Phosphotransferase) domain 1 516 728 - -
Vvi9g0292 749 Gene3D Phosphorylase Kinase; domain 1 422 515 - -
Vvi9g0292 749 SUPERFAMILY L domain-like 231 342 - -
Vvi9g0292 749 PRINTS Leucine-rich repeat signature 298 311 - -
Vvi9g0292 749 PRINTS Leucine-rich repeat signature 319 332 - -
Vvi9g0292 749 Gene3D Ribonuclease Inhibitor 232 350 IPR032675 -
Vvi9g0292 749 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 516 718 - -
Vvi9g0292 749 FunFam Leucine-rich repeat receptor-like kinase 231 359 - -
Vvi9g0292 749 SUPERFAMILY Protein kinase-like (PK-like) 426 707 IPR011009 -
Vvi9g0292 749 ProSiteProfiles Leucine-rich repeat profile. 297 320 IPR001611 GO:0005515
Vvi9g0292 749 Pfam Protein tyrosine and serine/threonine kinase 442 705 IPR001245 GO:0004672|GO:0006468
Vvi9g0292 749 Pfam Malectin-like domain 58 219 IPR024788 -
Vvi9g0292 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Vvi9g0292 749 CDD STKc_IRAK 446 708 - -
Vvi9g0292 749 ProSiteProfiles Protein kinase domain profile. 440 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0292 749 Pfam Leucine rich repeat 272 332 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0292 Vvi-Chr9 2889347 2893404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0292 59 749 Receptor kinase-like Gene Family AT2G19190 46.066 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0292 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0292 - - vvi:100251452 1190.64