Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0291 ATGGACGTTAGAAGCTTCCCAGAAGGAGACAGGAATTGTTACGCCCTACCACCAGGACAAGGCAAGAATCATAAGTATTTGATCAGGGCTTGGTTCATGTATGGGAATTATGATTCCAAGAATCAACCTCTAGTCTTCAAACTATATCTGGGTGTTGATGAATGGGCTACGGTGAATATAACAAATGCCTCTGTTATCATCAGAAAGGAAATCATACACATTCCGACAACAGATGACATAGATGTGTGTCTAGTAAACGCAGGTTCCGGGACGCCATTCATATCGGTGCTAGAGCTCCAACAGCTTAATGATTCCATTTATAGTCCAACTGAACCAGGATCCCTGCTACTCCATGACAGATGGGATTTTGGTACACAAAAAGAGAAGAGCAAAGATGATGTTTACGACCGGATTTGGAGACCATTCACAAAGTCGTCTTGGGAGTCCATTAATTCATCAGTTGTAAGATCTTCCTTTAGTGTCTCTGACTATAAACTGCCAGGGATTGTCATGGCGACTGCTGCAACACCTGCAAATGAAAGTGAACCCTTGCGAATCTCTTTAGACATAGATGATGATCCTTCTCAAAAGTTATACATTTACATGCACTTTGCCGAGGTTAAGGAAGGCGTGTTCAGAGAATTTACTACCTTCGTGAATGATGATGAGGCATGGGGTGGGACTGTGCTTACTACATACCTTTTTTCCTACACGGCAGAGAGCGACTATTCCATGAGCGGAAGTACCACAAAGAAATTGTCCTTTTCACTAAAAAGAACAAACAGATCCACGCTTCCACCAATTATCAATGCTATGGAGGTTTACATAATAAAAGAATTCTCACAAGCATCAACTCAACAAAACGATGTTGATGCAATCAAGGGGATCAAATCAGAGTACGCAGTGAGCAGGAACTGGCAAGGAGACCCATGTCTCCCCATCAAATACCAATGGGATGGCCTGACTTGCAGCCTCGATATTTCCCCTGCTATAATCACATTGAACCTCTCATCCAGCAATTTGGCCGGGAATATACTTACTTCATTTTCGGGTCTCAAATCTTTACAAAATCTGGATTTATCATACAACAACTTGACTGGACCAGTACCAGAATTTTTTGCAGACTTGCCATCTTTAACAACCCTTAACTTAACGGGGAACAACCTAACAGGTTCGGTTCCACAGGCTGTTATGGATAAGTTGAAGGATGGAACTCTGAGTCTTGGCGAAAATCCAAGTCTTTGTCAGTCAGCCTCGTGCCAAGGAAAGGAGAAGAAGAAGAGCAGGTTCCTTGTTCCTGTTCTCATAGCCATTCCGAATGTAATTGTGATCCTGATCCTCATAACTGCCCTTGCAATGATCATCCGGAAGTTCAGAAGGAGAGAAACCAAAGAGAAGTCAGGGAATTCCGAGTTCACTTACTCTGAGGTAGTGAGTATCACCAATAACTTTAGTCAGACCATCGGTAGAGGAGGATTCGGACAAGTTTTTCTAGGCACTTTGGCAGATGGCACTCAGGTTGCCGTCAAGGTGCATTCTGAATCATCAATACAAGAAGCTAAGGCATTACAAGCTGAGGTGAAACTCTTGACGAGAGTTCATCATAAAAACTTGGTTCGTCTAATTGGGTACTGTGATGACGGTACAAACATGGTTCTCATTTATGAATACATGTCCAATGGAAACCTGCAACAGAAGTTATCAGGGAGAGAAGCCGCAGATGTTTTGAATTGGGAAGAGAGACTTCAAATTGCAGTAGATGCAGCACATGGATTGGAGTATCTACACAATGGCTGTAAGCCACCAATAGTCCACAGAGACATGAAATCTTCCAACATTCTATTAACTGAAACACTGGAAGCGAAGATAGCTGATTTTGGGATGTCCAGAGATCTTGAAAGTGGTGCTCTCTTATCAACTGACCCAGTAGGCACACCTGGATATCTTGATCCTGAATACCAGTCAGCGGGTTTGAATAAGAAGAGCGATGTTTATAGCTTTGGGATTGTTTTGTTGGAGCTACTCACCGGCCGGCCTGCAATAATCCCTGGGGGCATTTATATAGTTGTATGGGTTAGTCATATGATTGAAAGAGGGGATATTGAAAGCATTGTTGATCGAAGGTTACAAGGAGAGTTCAACACCAATTCTGCCTGGAAAGCAGTAGAGATAGCCTTAGCATGTGTAGCATCAACAGGAATGCAAAGGCCAGACATGAGTCATGTAGTGGTAGACTTGAAGGAATGTTTGGAGACAGGGGTGGCTTCCAGGAGAATTAAGATGGTAGGTAGCCATCTAGAAGATGTTCCCGTGGTTCTTAGCACTGAATCGGCTCCCCATGCTAGGTAG 2349 0.4325 MDVRSFPEGDRNCYALPPGQGKNHKYLIRAWFMYGNYDSKNQPLVFKLYLGVDEWATVNITNASVIIRKEIIHIPTTDDIDVCLVNAGSGTPFISVLELQQLNDSIYSPTEPGSLLLHDRWDFGTQKEKSKDDVYDRIWRPFTKSSWESINSSVVRSSFSVSDYKLPGIVMATAATPANESEPLRISLDIDDDPSQKLYIYMHFAEVKEGVFREFTTFVNDDEAWGGTVLTTYLFSYTAESDYSMSGSTTKKLSFSLKRTNRSTLPPIINAMEVYIIKEFSQASTQQNDVDAIKGIKSEYAVSRNWQGDPCLPIKYQWDGLTCSLDISPAIITLNLSSSNLAGNILTSFSGLKSLQNLDLSYNNLTGPVPEFFADLPSLTTLNLTGNNLTGSVPQAVMDKLKDGTLSLGENPSLCQSASCQGKEKKKSRFLVPVLIAIPNVIVILILITALAMIIRKFRRRETKEKSGNSEFTYSEVVSITNNFSQTIGRGGFGQVFLGTLADGTQVAVKVHSESSIQEAKALQAEVKLLTRVHHKNLVRLIGYCDDGTNMVLIYEYMSNGNLQQKLSGREAADVLNWEERLQIAVDAAHGLEYLHNGCKPPIVHRDMKSSNILLTETLEAKIADFGMSRDLESGALLSTDPVGTPGYLDPEYQSAGLNKKSDVYSFGIVLLELLTGRPAIIPGGIYIVVWVSHMIERGDIESIVDRRLQGEFNTNSAWKAVEIALACVASTGMQRPDMSHVVVDLKECLETGVASRRIKMVGSHLEDVPVVLSTESAPHAR* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0291 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Vvi9g0291 782 PRINTS Leucine-rich repeat signature 376 389 - -
Vvi9g0291 782 PRINTS Leucine-rich repeat signature 355 368 - -
Vvi9g0291 782 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Vvi9g0291 782 Pfam Leucine rich repeat 333 389 IPR001611 GO:0005515
Vvi9g0291 782 SMART serkin_6 482 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0291 782 Gene3D Ribonuclease Inhibitor 290 405 IPR032675 -
Vvi9g0291 782 Gene3D Phosphorylase Kinase; domain 1 456 557 - -
Vvi9g0291 782 FunFam Leucine-rich repeat receptor-like protein kinase 460 557 - -
Vvi9g0291 782 Gene3D Transferase(Phosphotransferase) domain 1 558 762 - -
Vvi9g0291 782 SUPERFAMILY Protein kinase-like (PK-like) 468 746 IPR011009 -
Vvi9g0291 782 Pfam Malectin-like domain 2 276 IPR024788 -
Vvi9g0291 782 Pfam Protein tyrosine and serine/threonine kinase 484 745 IPR001245 GO:0004672|GO:0006468
Vvi9g0291 782 SUPERFAMILY L domain-like 314 398 - -
Vvi9g0291 782 CDD STKc_IRAK 488 748 - -
Vvi9g0291 782 FunFam Leucine-rich repeat receptor-like kinase 288 417 - -
Vvi9g0291 782 PANTHER OS07G0107800 PROTEIN-RELATED 2 750 - -
Vvi9g0291 782 ProSiteProfiles Protein kinase domain profile. 482 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0291 Vvi-Chr9 2883492 2887524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0291 2 755 Receptor kinase-like Gene Family AT2G19210 46.795 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0291 Malectin_like 9.1e-86 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0291 - - vvi:100244634 1515.75