Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0290 ATGCAGCACATGGATTGGAGTATCTACATAGGCTGTAAGCCACCAATAGTCCACAGAGACATGAAATCTTCAAACATTCTATTAAATGAAACACTGCAAGCCAAGATAGCTGATTTTGGGATGTCCAGAGATCTTGCAACTGAAAGTGGCTCTTTGATATCAATTGTCCCTGCAGGCACACCTGGATATCTGGATCCTGAATACCAACCGACGGGAAATTTGAATAAGAAAAGTGATGTTTACAGCTTTGGGATTGTTTTGTTGGAGCTTATCACCGGTCAGCCTGCAATAAAGAACCCTAGGAGCATTCATATAGTTGGATGGGTTAGTCCTATGATTGAAAGAGGGGATATTCAAAGCATTGTTGATCCAAGGTTACAAGGAGATTTACACACCAATTCTGCCTAG 408 0.4142 MQHMDWSIYIGCKPPIVHRDMKSSNILLNETLQAKIADFGMSRDLATESGSLISIVPAGTPGYLDPEYQPTGNLNKKSDVYSFGIVLLELITGQPAIKNPRSIHIVGWVSPMIERGDIQSIVDPRLQGDLHTNSA* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0290 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 16 28 IPR008271 GO:0004672|GO:0006468
Vvi9g0290 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0290 135 Pfam Protein kinase domain 16 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0290 135 Gene3D Transferase(Phosphotransferase) domain 1 3 135 - -
Vvi9g0290 135 PANTHER OS07G0107800 PROTEIN-RELATED 9 134 - -
Vvi9g0290 135 SUPERFAMILY Protein kinase-like (PK-like) 12 129 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0290 Vvi-Chr9 2856811 2857382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0290 11 134 Receptor kinase-like Gene Family AT1G51800 60.000 8.92e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0290 Pkinase 4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0290 - - vvi:100260016 224.172