Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0288 ATGAATGTTAGAAGCTTCCCGGAAGGTAACAAGAATTGTTACACCCTACGACCAGAAGGAGGCAAAGGTAATAAGTATTTGATCAGAGCTCGGTTCATGTATGGGAATTATGATTCCAATAATCATCTTCCGAAGTTCAAACTATATCTGGGTACTGATGAATGGGTCACAGTGAATATAGAAGATGCATCTGCTTATATCAGAGAAGAAATCATACATGTCCCAACAACAGATGACATATACGTTTGTCTAGTAAACATTGGTGGTGGGACACCTTTCATATCCACATTAGAGCTCAGACCGCTCAATAATTCCATTTACGATCAATCCGAACAGGGGTCGCTACTACTCTTCAACAGGTGGGATTTTTGCAAACCAGAGAATGCGCTACACAGGCCGGATGATGTTTTCGACCACATTTGGAACCTATCGGCCTGGTCGAATGAATGGGATACCCTCGAAGCAGCATATGAAATTTCTTCCCTTAGTCACAGTGAGTATAAACTTCCGATGTCGGTCATGATGGATGCTGTCATACCCGTAGATATAAGTGAGCCCTGGAACTTCTCTCTGGATCTTGATGATGATCCTTCACAAAATTTATACATATACATGCACTTTGCCGAGGTTCAGAAACTTCGAGAAGGGGATATTAGAGAATTTACTGTCTCACTAAATGAGGACGATTCATGGGGTGGTGGCGAGCCAGTGATTCCCAACTACATGGTTTCGAACACCTTACACCACCCATCTGCGGTGAGTGGAAGTACCACAAACGAATTGTCATTTGCACTAAAAAAGACTAATAGATCCACGCTTCCACCCCTTATCAATGCAATGGAAGTTTACAAAATAAAAGATTTTGCACAGTCATCAACTAAACAAGGGGATGTTCTCGCTGTCAAGAACATCCGGTCAGCGTACCGACTGACAAGACACTGGCAAGGAGATCCATGTCTCCCCTTGGATTTCCCATGGGATGGCCTGCAGTGCAGCTACAGCAGTGACTCCCCCACTATAATCTCACTGGATTTATCATACAACAACTTGACTGGAACGGTACCAGAATTTTTTGCAGACTTGCCATTGTTAATGGTCCTTAATTTGACGGGGAACCAGCTAACAGGTTCAGTTCCCCAAACTATTATGGAAATGTTCAAGGATAAGGATAGAACACTGAGTCTTGGCGCAAATCCAAATCTTTGCCCGTCAGTCTCTTGCCAAGGAAAGGAGAAGAAGAAGAAGAACAGGTTCCTTGTTCCTGTTCTCATAGCCATTCTGACTGTAACTGTGATCCTCGTCCTCATAACTGCCCTTGCAATGATCATCCGAAAGTTCAAAAGGAGAGAAACCAAAGCGACAACCATAGAGACGGTCAGTGAACGCCCCAAAGAGGGGTCATTGAAGTCAGGGAACTCTGAGTTCACTTTCTCTGACGTTGCAAGTATCACCAATAACTTTAGTCGTACCATCGGTAGAGGAGAATTCGGACAAGTTTATCTAGGCACTTTGGCAGATGGCACCCAGGTTGCGGTCAAGATGCGTTCTGAATCATCAATGCAAGGCCCCAAGGCATTACGAGCCGAGGTGAAACTCTTGACGAGAGTTCATCATAAAAACTTGGTTCGTCTGATTGGGTATTGCAATGACGGTACAAACATCGCTCTCGTTTATGAATACATGTCCAACGGAAACCTGCAACAGAAGTTATCAGGGAGAGCAGCGGCAGATGTTTTGAATTGGAAACAGAGACTTCAAATTGCAGTAGATGCAGCACATGGATTGGAGTATCTACACAATGGCTGTAAGCCACCAATAGTCCACAGAGACATGAAATCTTCCAACACTCTATTAACTGAAACACTGGAAGCCAAGATAGCTGATTTTGGGATGTCCAGAGATCTTGAAAGTGGTGCTCTCTTATCAACTGACCCAGTAGGCACACCTGGATATCTTGATCCTGAATACCAGTTGACGGGAAATTTGAATAAGAAGAGCGATGTTTACAGCTTTGGGATTGTTTTGTTGGAGCTTATCACCGGTCAGCCTGCAATAAAGAACCCTGGGAGCATTCATATAGTTGGATGGGTTAGTCCTATGATTGAAAGAGGGGATATTCAAAGCATTGTTGATCCAAGGTTACAAGGAGATTTCCACACCAATTCTGCCTGGAAAGCCCTAGAGATAGCCTTAGCATGTGTAGCATTAACAGGAATGCAAAGGCCAGATATGAGTCATGTATTGGCAGACTTGAAGGAATGTTTGGAGATAGAGATGGCTTCCAGGAGAACTCAAAGTGTTAGCCACAGCATCGGATCAGGCAATTTCCTGGAAGATAGTCCCTTGACTCTTGGCACTCAATCGGCTCCCCGTGCTACGTAG 2382 0.4412 MNVRSFPEGNKNCYTLRPEGGKGNKYLIRARFMYGNYDSNNHLPKFKLYLGTDEWVTVNIEDASAYIREEIIHVPTTDDIYVCLVNIGGGTPFISTLELRPLNNSIYDQSEQGSLLLFNRWDFCKPENALHRPDDVFDHIWNLSAWSNEWDTLEAAYEISSLSHSEYKLPMSVMMDAVIPVDISEPWNFSLDLDDDPSQNLYIYMHFAEVQKLREGDIREFTVSLNEDDSWGGGEPVIPNYMVSNTLHHPSAVSGSTTNELSFALKKTNRSTLPPLINAMEVYKIKDFAQSSTKQGDVLAVKNIRSAYRLTRHWQGDPCLPLDFPWDGLQCSYSSDSPTIISLDLSYNNLTGTVPEFFADLPLLMVLNLTGNQLTGSVPQTIMEMFKDKDRTLSLGANPNLCPSVSCQGKEKKKKNRFLVPVLIAILTVTVILVLITALAMIIRKFKRRETKATTIETVSERPKEGSLKSGNSEFTFSDVASITNNFSRTIGRGEFGQVYLGTLADGTQVAVKMRSESSMQGPKALRAEVKLLTRVHHKNLVRLIGYCNDGTNIALVYEYMSNGNLQQKLSGRAAADVLNWKQRLQIAVDAAHGLEYLHNGCKPPIVHRDMKSSNTLLTETLEAKIADFGMSRDLESGALLSTDPVGTPGYLDPEYQLTGNLNKKSDVYSFGIVLLELITGQPAIKNPGSIHIVGWVSPMIERGDIQSIVDPRLQGDFHTNSAWKALEIALACVALTGMQRPDMSHVLADLKECLEIEMASRRTQSVSHSIGSGNFLEDSPLTLGTQSAPRAT* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0288 793 Pfam Malectin-like domain 2 285 IPR024788 -
Vvi9g0288 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vvi9g0288 793 Gene3D Ribonuclease Inhibitor 300 412 IPR032675 -
Vvi9g0288 793 Pfam Protein tyrosine and serine/threonine kinase 487 750 IPR001245 GO:0004672|GO:0006468
Vvi9g0288 793 FunFam Leucine-rich repeat receptor-like protein kinase 463 560 - -
Vvi9g0288 793 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 561 764 - -
Vvi9g0288 793 SMART serkin_6 485 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0288 793 PANTHER OS07G0107800 PROTEIN-RELATED 2 755 - -
Vvi9g0288 793 Gene3D Transferase(Phosphotransferase) domain 1 561 773 - -
Vvi9g0288 793 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
Vvi9g0288 793 Gene3D Phosphorylase Kinase; domain 1 457 560 - -
Vvi9g0288 793 MobiDBLite consensus disorder prediction 770 793 - -
Vvi9g0288 793 SUPERFAMILY L domain-like 335 402 - -
Vvi9g0288 793 Pfam Leucine rich repeat 342 383 IPR001611 GO:0005515
Vvi9g0288 793 SUPERFAMILY Protein kinase-like (PK-like) 469 751 IPR011009 -
Vvi9g0288 793 ProSiteProfiles Protein kinase domain profile. 485 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0288 793 CDD STKc_IRAK 491 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0288 Vvi-Chr9 2824374 2827869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0288 2 755 Receptor kinase-like Gene Family AT2G19210 45.235 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0288 Malectin_like 2.4e-91 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0288 - - vvi:100260016 1564.28