Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0287 ATGACACGAACACAAACACAATCCACCAATATAAACTGGAGAGAAGCTGCAGATGTTTTGAATTGGAAACAGAGACTTCAAATTGCAGTAGATGCAGCACAAGGATTGGAGTATCTACACATTGGCTGTAAGCCACCAATAGTCCACAGAGACATGAAGTCTTCCAAAATTCTATTAACTGAAACCCAGCAAGCCAAGATAGCTGATTTTGGGATGTCCAGAGATCTTGCAACTGAAAGTGGCGCTTTCATATCAACTGTCCCTGCAGGCACACCTGAATATCTGGATCCTGACCATATTTACAGCTTTGGGGTTGTTTTGTTGGAGCTGATCACCGGCCACCCTGCAATAAAGAACCCTGGCAGCATTCATATAGTTGGATGGGTTAGTCCTATGATTGAATGA 405 0.4321 MTRTQTQSTNINWREAADVLNWKQRLQIAVDAAQGLEYLHIGCKPPIVHRDMKSSKILLTETQQAKIADFGMSRDLATESGAFISTVPAGTPEYLDPDHIYSFGVVLLELITGHPAIKNPGSIHIVGWVSPMIE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0287 134 SUPERFAMILY Protein kinase-like (PK-like) 18 124 IPR011009 -
Vvi9g0287 134 Pfam Protein kinase domain 22 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0287 134 ProSiteProfiles Protein kinase domain profile. 1 134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0287 134 PANTHER OS07G0107800 PROTEIN-RELATED 15 128 - -
Vvi9g0287 134 Gene3D Transferase(Phosphotransferase) domain 1 9 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0287 Vvi-Chr9 2800023 2801734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0287 20 129 Receptor kinase-like Gene Family AT1G05700 59.350 2.76e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0287 Pkinase 4.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0287 - - vvi:104880299 232.261