LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi9g0281	ATGTATGGGAATTATGATTCCAAGAATCAACCTCCAATCTTCAAGCTATATCTGGGTGTTGATGAATGGGCCACGGTGAGGATAGAAAAGGCCATTGAAATTAGCATGGCAGAAATCATACACATACCAATTACAGATGACATAGATGTGTGTCTAGTAAACACCGGTTTGGGGACACCATTCATATCGGTGTTAGAGCTCAGACAGCTTAATGATTCGATTTATAGTCCACCTGAACCAGGGTCACTGCTTCTCCGTGGTAGGTTCGATTTTGGTACACAACAGGACTTGTATGCAATCAGGGACAAAGATGATGTTTACGATCGGATTTGGGAACCAGCCAATTCGGAGTCCATTAGTTCACCACTTGTAAATTCTTCCTTTAGTACCTCTGACTATAAACTACCAGGGATTGTCATGGCAACTGCTGCAACACCTGCAGATGAAAATGAACCCTTGGGTTTCTCTTTTTTAATAGCTGGTCATCCTTCTCAAAAGTTGTACGTGTACATGCACTTTGCGGAGGTTGAGGATCTCAAGGGCCAAATCAGAGAATTTACCATCTCCGTGAATGATGATGAGTCATTTGGTGGGCCAGTGGCTCCTAGATACCTACTTTCGGACACGGTATATAGCAAATATTCCCTGAATGGAAGTATTAACCGATTGTCCTTTTCACTAAAAAGGACAAACAGATCCACGCTTCCACCAATTATCAATGCTATGGAGGTTTACAGGTTAAAAGAATTCTCACAGTCATCAACCCAACAAAACGATGTTGATGCAATCAAGAGGATCAAATCAGGATACGCAGTGAGCAGCAACTGGCAAGGAGATCCATGTCTCCCCATGAAATACCAATGGGATGGCCTGACTTGCAGCCAAGATACTTCCCCTTCTATAATATCATTGAACCTCTCATCTAGCAATTTGTCCGGGAATATACTTACTTCATTTTCAAGTCTCAGATCATTACAAAATCTGGATTTATCATACAACAACTTGACTGGACCAGTACCAGAATTTTTTGCAGACTTGCCATCTTTAAAAACCCTAAATTTAACGGGGAACAACCTAACAGGTTCGGTTCCACAGGCTGTTATCGATAAGTTCAAGGATGGAACTCTGAGTCTTGGCGAAAATCCAAATCTTTGTCAGTCAGACTCGTGCCAAAGAAAGAAGAAGAAGGAGAACAAGTTCCTTGTTCCTGTTCTTATATCCGTTCTGTCTGTAATTATCCTGATTCTCATAGCTGCCCTTGCAATCATCCGGAAGTTGACCAAGAGGAGAGAAACTAGAGAGACGGTCAGTGAACGCCCCAAAGAAGGGTCATTGAAGTCAGGGAATTCCGAGTTCACTTTCTCTGATGTGGCAACTATCACCAATTACTTTAGTCGTACCATCGGTAGAGGAGGATTCGGACAAGTTTATCTAGGCACTTTGACAGATGGCACTCAGGTTGCCGTCAAGATGCGTTCTCAATCATCAATACAAAGCCCCAAGGCATTACAAGCCGAGGCGAAACTCTTGACGAGAGTTCATCATAAAAACTTGGTTCGTCTAATTGGGTACTGCAAGGATGGTACACACATGGCTCTCATTTATGAATACATGTCCAATGGAAACTTGCAAAACAAGTTATTAGGGAGAGAAGCTGCAGATGTTTTGAATTGGAAACAGAGACTTCAAATTGCAGTAGATGCAGCACATGGATTGGAGTATCTACACAATGGCTGTAAGCCACCAATAGTCCACAGAGACATGAAATCTTCCAACATTCTATTAACTGAAACACTGCAAGCCAAGGTAGCTGATTTTGGGATGTCCAGAGATCTTGCAATTGAAAGTGGAGCTTTCATATCAACTGTCCCTGCAGGCACACCTGGATATCTGGATCCGGAATACCAGTCAACGGGAATTTTGAATAAGAAGAGCGATGTTTACAGCTTTGGGATTGTTTTGTTGGAGCTAATCACCGGCCAGCCTGCGATAAAGAACCCTGGGAACATTCATATAGTTGGATGGGTTAGTCCTATGATTAAAAGAGGGGATATGCGAAGCATTGTTGATCCAAGGTTACAAGGAGCTTTCAACGCCAATTCTGCCTGGAAAGCCCTAGAGTTAGCCTTAGCATGTGTAGCATTAACAGGAATGCAAAGGCCAGATATGAGTCATGTACTGGAAGACTTGAAGGAATGTTTGGAGATGGAGGTGACTTCCAGGAGAATTCAAAGTGTAGGTAGCCACAGCATCGGATCAGGCAATTCCCTGGACGATCTTCCCTTGATTCTTGGCACTCAATTGGGTCCCCGTGCTAGGTAG	2322	0.4311	MYGNYDSKNQPPIFKLYLGVDEWATVRIEKAIEISMAEIIHIPITDDIDVCLVNTGLGTPFISVLELRQLNDSIYSPPEPGSLLLRGRFDFGTQQDLYAIRDKDDVYDRIWEPANSESISSPLVNSSFSTSDYKLPGIVMATAATPADENEPLGFSFLIAGHPSQKLYVYMHFAEVEDLKGQIREFTISVNDDESFGGPVAPRYLLSDTVYSKYSLNGSINRLSFSLKRTNRSTLPPIINAMEVYRLKEFSQSSTQQNDVDAIKRIKSGYAVSSNWQGDPCLPMKYQWDGLTCSQDTSPSIISLNLSSSNLSGNILTSFSSLRSLQNLDLSYNNLTGPVPEFFADLPSLKTLNLTGNNLTGSVPQAVIDKFKDGTLSLGENPNLCQSDSCQRKKKKENKFLVPVLISVLSVIILILIAALAIIRKLTKRRETRETVSERPKEGSLKSGNSEFTFSDVATITNYFSRTIGRGGFGQVYLGTLTDGTQVAVKMRSQSSIQSPKALQAEAKLLTRVHHKNLVRLIGYCKDGTHMALIYEYMSNGNLQNKLLGREAADVLNWKQRLQIAVDAAHGLEYLHNGCKPPIVHRDMKSSNILLTETLQAKVADFGMSRDLAIESGAFISTVPAGTPGYLDPEYQSTGILNKKSDVYSFGIVLLELITGQPAIKNPGNIHIVGWVSPMIKRGDMRSIVDPRLQGAFNANSAWKALELALACVALTGMQRPDMSHVLEDLKECLEMEVTSRRIQSVGSHSIGSGNSLDDLPLILGTQLGPRAR*	774

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi9g0281	773	Gene3D	Phosphorylase Kinase; domain 1	435	537	-	-
	Vvi9g0281	773	Pfam	Protein tyrosine and serine/threonine kinase	464	730	IPR001245	GO:0004672\|GO:0006468
	Vvi9g0281	773	SUPERFAMILY	Protein kinase-like (PK-like)	446	730	IPR011009	-
	Vvi9g0281	773	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	583	595	IPR008271	GO:0004672\|GO:0006468
	Vvi9g0281	773	ProSiteProfiles	Protein kinase domain profile.	462	734	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi9g0281	773	CDD	STKc_IRAK	468	732	-	-
	Vvi9g0281	773	Gene3D	Transferase(Phosphotransferase) domain 1	538	750	-	-
	Vvi9g0281	773	Gene3D	Ribonuclease Inhibitor	259	375	IPR032675	-
	Vvi9g0281	773	ProSiteProfiles	Leucine-rich repeat profile.	305	326	IPR001611	GO:0005515
	Vvi9g0281	773	PRINTS	Leucine-rich repeat signature	346	359	-	-
	Vvi9g0281	773	PRINTS	Leucine-rich repeat signature	325	338	-	-
	Vvi9g0281	773	SMART	serkin_6	462	734	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi9g0281	773	Pfam	Malectin-like domain	1	246	IPR024788	-
	Vvi9g0281	773	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	538	743	-	-
	Vvi9g0281	773	ProSitePatterns	Protein kinases ATP-binding region signature.	468	490	IPR017441	GO:0005524
	Vvi9g0281	773	Pfam	Leucine rich repeat	303	359	IPR001611	GO:0005515
	Vvi9g0281	773	SUPERFAMILY	L domain-like	284	368	-	-
	Vvi9g0281	773	FunFam	Leucine-rich repeat receptor-like kinase	258	387	-	-
	Vvi9g0281	773	PANTHER	OS07G0107800 PROTEIN-RELATED	1	734	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi9g0281	Vvi-Chr9	2695940	2699927	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi9g0281	1	773	Receptor kinase-like Gene Family	AT2G19190	47.201	0.0	655

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Vvi9g0281		PK_Tyr_Ser-Thr	1.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi9g0281	-		-	vvi:104880223	1454.5