Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0280 ATGTTTGTGGAGTGCAGAGGAACATATGCCTGGTCTTCAAAAGTATGCCTTATTTTCCTGCAAGTGTTTGCCCTCACCATTTCTATGGAAGAATCGGTAGCTCTGGCTTCTGATGGTGTTTTTGGTAATTCAGAAAGCGTCATCAATCGTAAACCTGCTCGAAGGAAGCTAGATGACATAGCTGGCTCCATAAACATAGACTGCGGGCTACCTGAAGATTGCAAGTACATTGATGCCGAAACTGGGTTACAGTACACTTCAGATGCAAGCTTCATCAGATCCGGAATAAATAAGAACATATCATCCAAGTTCAGCTCTACAACTCTTCATAAGTCTCTCACAAATGTTAGAAGCTTCCCTCAAGGGAAAAGGAATTGTTACACACTGAGACCTCCAGAAGGCCATGGCACTATGTATTTGATCAGAGCTTCCTTCATGTATGGAAACTATGATGAACTCAACCAGGTTCCACAGTTTGATCTTTATATTGGAGTTAACATGTGGGATTCTGTGAAGCTGGACAATGCATCTCATCTTGTGATGAAGGAGATTCTACATGCTCCCTCAGATGATGATATCTATGTATGTCTTGTAAATATCGGTTATGGAGAACCATTTATATCATCACTGGAAGTAAGGCATTTTCATGATTCTAGTTATAAGACTGAGTCTGGATCACTAGCTTTATACAGGCGGCTCGATGCTGGTTCAACAACCAATGAGATAGTCAGGTTCAAAGACGACGCTTATGATCGAATTTGGTTTCCTTATAATTTGCCTGACTGTGAATCACTCAATACAACAGTGCCCATTGATTCCCATGCTGAAACTGAGTATAAACTGCCATCAAAGGTCATGACCACTGCCATTAGGCCAATGAATAGCAGTGCCTCATTGGACTTTGATTTCGATATCGGTGATTCCACTCTGGAGTTTTATGTGTACATGCACTTTGCAGAACTTGAGGGGCTGCAGGAAAACCAGACTAGAAATTTCAGCATTACCCTGAATGGTAACCCCTGGGGGGAAGCTAATATTGTTCCCAAGTACCTGCACTCAAGAACTGTAAATAACAAACAGCCAGTGAGGGGATCCAAGCTGAAGTTTTCTATTTATAAGACATTGAATTCTTCCCTTCCTCCGATCCTAAATGCCATGGAGATTTACATGGTGAAAGGTCTCTTACAGGCGCCAACTTGCCAAGAAGATGTAAATGGTATCTCGAGAATCAAATCATTCTATCTTGTTGAGAAGAACTGGCAAGGAGATCCATGTGCCCCAGTGCAACCTTGGGATGGCCTCACCTGCAGTAACAATGGTTATGAATCACCCAGAATCATCTCTCTGAAACTGTCCTCAAGTGGATTGAGAGGCACGATATCTCCTTCACTGTTGAATCTCACAGCATTACAGTTCCTGGATTTGTCGAACAATAGCCTAACAGGAGAACTGCCTGAATTTTTGTCACGACTGTCATTCTTGACTGCCCTGAATGTTACAGGAAACAAGCTCTCGGGTTCAGTTCCTCCAGATCTCATTGCAAGATCAGAGAAAGGGTCACTGTCATTGAGTGTGGCCAACAACCCGGATCTTTGTCCATCGGCTCAATGCAAAGAGAATAAGAACTCTGTCGGTCCAATAGTTGCAGCAGTAGTTTCATCACTTGTCATCATCTTCCTTGCATTGGTTATTATATGGAGCCTAAAAAGAAGGAAAAAAGCTACAAAATCACTTGTCAGATCTCCTGAAGAAACATGGTCACTAAAGATGGAGAACCAACGATTCAGATACTTAGAGATTGTGAGTATTACCAATGACTTTCAAACAGTCCTTGGGACGGGAGGATTTGGAACCGTTTACCATGGCTGCATGCTTAATGGCACACAAGTTGCTATCAAGATGCTCTCTCAATCATCAAAACAAGGAATGAAGGAGTTTCGCAATGAGGCTAGGCTCTTGATGAGAGTTCACCACAGAAACTTGGCTTCTCTGGTTGGGTACTGCCATGAAGGTACAAACATGGGGCTCATCTATGAGTACATGGCTGGTGGGAACTTACAAAATTATCTATCAGGGGCAGATATAAGCACTAGTCCTTTGAGTTGGATAGAGAGACTTCAAATAGCAGTGGATGCAGCACAAGGACTAGAATACATGCACTGTGGTTGCAAGCCACCTATAATCCACAGAGATGTGAAAACTGCCAACATTTTGTTGAGTGAAAAACTGCAAGCTAAGATAGCTGATTTTGGGTTCTCAAGATTTTTCTCAATTGAGAGTGAAACTCATGCCACAACTGCAGTTGTTGGCACTATTGGTTACATTGATCCAGAGTACTACATATCTAATAGGTTGACCGAGAAAAGTGATGTTTATAGCTTTGGAATTGTTCTATTGGAGTTGATAACTGGAAAACCTGCAATCATTAAAGATGAAGACAATATTCATATAGTTCAATGGGTAAGGTCTTTTGTGGAGAGAGGGGACATTGGAAGCATTGTTGATCCCAGGCTACAAGGAAATTTGAACACAAATTCAGTTTGGAGAGTTTTGGAGACAGCAATGGCATGCCTACCACCAATTTCCATCCAAAGGGTGACTATGAGTCATGTAGTGATGCAACTAAAGGAGTGTTTGGAAGAAGAGAAAGCTCATGATCAAACTAGAAGGATGGAGGAACAGGCCACAAAATCAAGCAATTTGATTGACTTATATAGTTTGGATCTTGAACTTGAAATGGGTCCAGAAGCAAGATAA 2757 0.4182 MFVECRGTYAWSSKVCLIFLQVFALTISMEESVALASDGVFGNSESVINRKPARRKLDDIAGSINIDCGLPEDCKYIDAETGLQYTSDASFIRSGINKNISSKFSSTTLHKSLTNVRSFPQGKRNCYTLRPPEGHGTMYLIRASFMYGNYDELNQVPQFDLYIGVNMWDSVKLDNASHLVMKEILHAPSDDDIYVCLVNIGYGEPFISSLEVRHFHDSSYKTESGSLALYRRLDAGSTTNEIVRFKDDAYDRIWFPYNLPDCESLNTTVPIDSHAETEYKLPSKVMTTAIRPMNSSASLDFDFDIGDSTLEFYVYMHFAELEGLQENQTRNFSITLNGNPWGEANIVPKYLHSRTVNNKQPVRGSKLKFSIYKTLNSSLPPILNAMEIYMVKGLLQAPTCQEDVNGISRIKSFYLVEKNWQGDPCAPVQPWDGLTCSNNGYESPRIISLKLSSSGLRGTISPSLLNLTALQFLDLSNNSLTGELPEFLSRLSFLTALNVTGNKLSGSVPPDLIARSEKGSLSLSVANNPDLCPSAQCKENKNSVGPIVAAVVSSLVIIFLALVIIWSLKRRKKATKSLVRSPEETWSLKMENQRFRYLEIVSITNDFQTVLGTGGFGTVYHGCMLNGTQVAIKMLSQSSKQGMKEFRNEARLLMRVHHRNLASLVGYCHEGTNMGLIYEYMAGGNLQNYLSGADISTSPLSWIERLQIAVDAAQGLEYMHCGCKPPIIHRDVKTANILLSEKLQAKIADFGFSRFFSIESETHATTAVVGTIGYIDPEYYISNRLTEKSDVYSFGIVLLELITGKPAIIKDEDNIHIVQWVRSFVERGDIGSIVDPRLQGNLNTNSVWRVLETAMACLPPISIQRVTMSHVVMQLKECLEEEKAHDQTRRMEEQATKSSNLIDLYSLDLELEMGPEAR* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0280 918 FunFam Leucine-rich repeat receptor-like protein kinase 582 680 - -
Vvi9g0280 918 ProSiteProfiles Protein kinase domain profile. 605 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0280 918 Pfam Malectin-like domain 66 391 IPR024788 -
Vvi9g0280 918 SUPERFAMILY Protein kinase-like (PK-like) 584 875 IPR011009 -
Vvi9g0280 918 FunFam Leucine-rich repeat receptor-like kinase 404 534 - -
Vvi9g0280 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 727 739 IPR008271 GO:0004672|GO:0006468
Vvi9g0280 918 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 681 888 - -
Vvi9g0280 918 Gene3D Ribonuclease Inhibitor 408 527 IPR032675 -
Vvi9g0280 918 Pfam Protein tyrosine and serine/threonine kinase 607 807 IPR001245 GO:0004672|GO:0006468
Vvi9g0280 918 PANTHER OS07G0107800 PROTEIN-RELATED 64 882 - -
Vvi9g0280 918 SUPERFAMILY L domain-like 406 512 - -
Vvi9g0280 918 ProSitePatterns Protein kinases ATP-binding region signature. 611 633 IPR017441 GO:0005524
Vvi9g0280 918 SMART serkin_6 605 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0280 918 Gene3D Transferase(Phosphotransferase) domain 1 681 903 - -
Vvi9g0280 918 CDD STKc_IRAK 611 877 - -
Vvi9g0280 918 Gene3D Phosphorylase Kinase; domain 1 587 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0280 Vvi-Chr9 2679371 2685125 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0280 56 918 Receptor kinase-like Gene Family AT2G19210 47.941 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0280 Malectin_like 2.1e-115 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0280 - - vvi:100249701 1832.38