Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0275 ATGGCGTCGACGCCGATGGCGCCGCCGAACCCGGCGGCGGGAAACCCTAACTTCGACGGGAATCCGCCGGCGGTCCCAACTCCGCCGGGAACAGACATGACGGGCATCTGTTTCAGAGATCAGCTATGGTTAAACTCCTACCCTCTGGATCGAAACCTCGTGTTTGATTACTTTGCTTTGTCTCCTTTCTACGATTGGACCTGCAATAACGAACAGCTTCGTCTACGATCAATTCATCCTCTCGACACCTCGCATCTGTCGAAAATGACTGGTACCGAATACATGCTGAATGAAGTTATGGAGCCCCACCTCTTTGTCATCCGGAAGCAAAAGAGAGATGGCCCTGAGAAAGTTACACCAATGCTTACTTATTATATTTTGGATGGTTCAATCTACCAAGCTCCACAACTCTGCAATGTCTTTACAGCTCGAATTGGCCGGGCTCTGTATCATATATCAAAGGCTTTTACTACTGCTGCCTCAAAGCTGGAGAAGATTGGATATGTGGATGCTGAAAATGAAAATCCGGCACTTGAATCAAAGGTTGGTAAAGAGACAATCGACTTTAAGGAAGTCATGCGAGTGGACCAGATTCTTGCATCTTTACAGCGCAAGCTACCTCCAGCCCCTCCACCACCACAATTCCCAGAAGGCTATGCTCCCCCTCCAACAGCGGAAGGAGAGAAAGGCCCCGAAACCCAGCAAGCAGCCGAGCCACAGCTTCCGGCTCTTGATCCCATCATCGACCAAGGCCCATCTAAAAGAATGAAATTTTGA 777 0.4955 MASTPMAPPNPAAGNPNFDGNPPAVPTPPGTDMTGICFRDQLWLNSYPLDRNLVFDYFALSPFYDWTCNNEQLRLRSIHPLDTSHLSKMTGTEYMLNEVMEPHLFVIRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFTARIGRALYHISKAFTTAASKLEKIGYVDAENENPALESKVGKETIDFKEVMRVDQILASLQRKLPPAPPPPQFPEGYAPPPTAEGEKGPETQQAAEPQLPALDPIIDQGPSKRMKF* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0275 258 MobiDBLite consensus disorder prediction 9 29 - -
Vvi9g0275 258 MobiDBLite consensus disorder prediction 203 258 - -
Vvi9g0275 258 Pfam MED6 mediator sub complex component 36 161 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vvi9g0275 258 PANTHER MED-6-RELATED 13 258 IPR007018 GO:0003712|GO:0006357|GO:0016592
Vvi9g0275 258 MobiDBLite consensus disorder prediction 205 220 - -
Vvi9g0275 258 MobiDBLite consensus disorder prediction 1 29 - -
Vvi9g0275 258 PIRSF MED6_meta/plant 21 258 IPR016820 GO:0003712|GO:0006357|GO:0016592
Vvi9g0275 258 Coils Coil 256 258 - -
Vvi9g0275 258 Gene3D Mediator complex, subunit Med6 30 159 IPR038566 -
Vvi9g0275 258 FunFam Mediator of RNA polymerase II transcription subunit 6 30 159 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Vvi9g0275 Med6 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0275 K15128 - vvi:100253150 496.123