Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0272 ATGAAATTGGATATGGAGCATCTGTGCCCGGTTTACCTTGGTCATTTTCGCAATCGTATTGAGTTGGCTGTCAAGAAGCTTTCAGCTTTAAATAGAGGATTCAGGAAATTTCAGACAGAGGCAAGCTTCTCTATAGCTGAGCTGTTGACAAGAGTTCACCATAAAAACTTGGTTTCTCCGCTTGGATACCATTTTGAAAGTTCAAGCATGACACTCATTTATGAGTATATGGGGCCGGGGAGCTTAAGAAAGTATTTATCAGGTATCCATTTCTCTAATACTCAATACAATCTCTGGAAACAAAGAATTGGAATAGCACTTGATGTAGCGCAAGGACTGGAATATTTACATAATGGTTGCAAGACACCCATAATCCAGAGAGACATTAAATCTGCAAACATCTTACTAAATGAAAAGAACGAAAAATTGCAAGCTAAAGTGGCAGATTTTGGGTTGTCTAGAAGTGTGCCTAATGAAGATCCTGCTTATTTATCAACTGTGGTCGTTGGCACATGCCATTACCTTGACCCCAAGTATTTCTTAACGGCAGGGTTGAGTGAGGAAAATGATGTCTATGGCTTTGGGATTGTTCTATTGGAGCTTATTTCAGGCCAACCTGCAGTGGCAAAGAGCAGCGTGGGCACAGTTCACCTACTCCAATGTGTTCCTCTCCTGCTTCTTGATACGGGGGAAATCACGGCTATTGTGGATCCAAGGTTAAATATTGAACGCTTTGACATCTATTCTGCCCGGAAGCTTGTAGGAACAGCAATGGCTTGTGTAAAATGTAACTCCCCGAAAAGGCCAATCATGAGTGATGTAGCAGACAAATTAAAACAGTGTATGAACTATTTAGCAAGAACAATTGGGGATGCGGAAGAGTAG 885 0.4136 MKLDMEHLCPVYLGHFRNRIELAVKKLSALNRGFRKFQTEASFSIAELLTRVHHKNLVSPLGYHFESSSMTLIYEYMGPGSLRKYLSGIHFSNTQYNLWKQRIGIALDVAQGLEYLHNGCKTPIIQRDIKSANILLNEKNEKLQAKVADFGLSRSVPNEDPAYLSTVVVGTCHYLDPKYFLTAGLSEENDVYGFGIVLLELISGQPAVAKSSVGTVHLLQCVPLLLLDTGEITAIVDPRLNIERFDIYSARKLVGTAMACVKCNSPKRPIMSDVADKLKQCMNYLARTIGDAEE* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0272 294 Pfam Protein tyrosine and serine/threonine kinase 14 207 IPR001245 GO:0004672|GO:0006468
Vvi9g0272 294 Gene3D Phosphorylase Kinase; domain 1 6 77 - -
Vvi9g0272 294 SMART serkin_6 5 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0272 294 SUPERFAMILY Protein kinase-like (PK-like) 11 278 IPR011009 -
Vvi9g0272 294 PANTHER OS07G0107800 PROTEIN-RELATED 10 282 - -
Vvi9g0272 294 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0272 294 Gene3D Transferase(Phosphotransferase) domain 1 78 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0272 Vvi-Chr9 2652219 2653725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0272 18 283 Receptor kinase-like Gene Family AT2G19210 51.111 2.66e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0272 PK_Tyr_Ser-Thr 5.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0272 - - vvi:100241278 288.5