Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0271 ATGCCCTCTGAAGGTGGAAGCTATGTATCAACTGCAATTGTTGGCACACCGGGGTACATCGACCCCGAGTACGACAAAACCTCAGTACCAAGTAAGAAAACTGATATTTATAGCTTTGGGATTGTTTTATTGGAGCTTATTTCGGGTCGACCTGCAATCATAAAGATCACAAAAGAGAGCCCATGTAACATAGCAGATTGGGTTCACCTAGTCACTGCAAAAGGTGATATAAAAATGATCGTAGATCCAAGGTTACAAGGAGAATTTGACCCCAATTCTGCCCAGAGAGCTGTAGAGACAGCAATGTATTGTGTCCCAGTCAGCTCCATAGATAGGCCAACCATGAACATTGTTGTCAAACCTAACGAGGATGATAAAACATTTGAGCCAAAGAACCAACACCTTACTTATTTTGAGGTTGAAAGAATCACTGACAATTTCCAAAAGGAGCTTGGAAGAGGAGCATCATCAATAGTTTATCATGGTCATTTAAGTAATGGCACTGAAGTTGCAGTCAAGAAGCTGTCACCTTCATCAATTCTAGGGTCAAAGCAATTCAAAACTGAGGCTCAGCTTTTGACACGAGTTCATCATAAAAACTTGGTTTCTCTATTTGGATACTGTGATGAAGGTTCAAACATGGTGCTCATTTATGAGTATATGGCAAAGGGGAATGTAAAAGCATATTTATCAGGTAAAACAGAAGCTGTCCTGAGTTGGGAACAAAGACTTCAAATAGCAATTGATGCAGCACAAGCACTGGAATATTTACACAATGGTTGCAACCCACCCATAATCCATAGAGATATCAAAACTGAAAACATCCTATTGAATGAAAAATTGCAAGCGAAAGTGGCAGATTTTGGTTGGTCTAAAAGTATGCCTGCTGAAGGTGGAAGCTATGTATTAACTGCAATTGTTGGCACACCTGGCTACCTCGACCCTGAATATCACAGAAGCTCAGTGCCAAATGAGAAAACCGATGTTTATAGCTTTGGGATTGTTTTGTTGGAGCTTATTTCAGGTAGGCCTGCAATCATAAAGATAACAAAAGAGAACCTATGTAACATAACAAATTGGGTCCACCACATCATTGCAAAAGGGGATATAAGAATGATTGTAGATCCAAGGTTACAAGGAGAATTTGAGACCAATTCTGCCAGGAGAACTATAGAGACAGCAATGTCCTGTGTATCATTCAGCTCCACTGAGAGGCCTACTATGAGCGACATAGTAGTAGAATTAAGAGAATGTCTAAAAATAGCGATGGCCCATGAAAGAACTAACAATTTGGAAGAGGACCATGATTCTGCTGGTATTGAAGCTGCAATGACTGCTGAAGAAAGGTAG 1350 0.403 MPSEGGSYVSTAIVGTPGYIDPEYDKTSVPSKKTDIYSFGIVLLELISGRPAIIKITKESPCNIADWVHLVTAKGDIKMIVDPRLQGEFDPNSAQRAVETAMYCVPVSSIDRPTMNIVVKPNEDDKTFEPKNQHLTYFEVERITDNFQKELGRGASSIVYHGHLSNGTEVAVKKLSPSSILGSKQFKTEAQLLTRVHHKNLVSLFGYCDEGSNMVLIYEYMAKGNVKAYLSGKTEAVLSWEQRLQIAIDAAQALEYLHNGCNPPIIHRDIKTENILLNEKLQAKVADFGWSKSMPAEGGSYVLTAIVGTPGYLDPEYHRSSVPNEKTDVYSFGIVLLELISGRPAIIKITKENLCNITNWVHHIIAKGDIRMIVDPRLQGEFETNSARRTIETAMSCVSFSSTERPTMSDIVVELRECLKIAMAHERTNNLEEDHDSAGIEAAMTAEER* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0271 449 Pfam Protein kinase domain 148 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0271 449 SMART serkin_6 145 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0271 449 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 221 428 - -
Vvi9g0271 449 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0271 449 SUPERFAMILY Protein kinase-like (PK-like) 127 415 IPR011009 -
Vvi9g0271 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vvi9g0271 449 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Vvi9g0271 449 FunFam Leucine-rich repeat receptor-like protein kinase 123 220 - -
Vvi9g0271 449 Gene3D Transferase(Phosphotransferase) domain 1 222 442 - -
Vvi9g0271 449 Gene3D Transferase(Phosphotransferase) domain 1 1 142 - -
Vvi9g0271 449 ProSiteProfiles Protein kinase domain profile. 145 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0271 449 CDD STKc_IRAK 151 415 - -
Vvi9g0271 449 PANTHER OS07G0107800 PROTEIN-RELATED 130 419 - -
Vvi9g0271 449 Gene3D Phosphorylase Kinase; domain 1 151 221 - -
Vvi9g0271 449 SUPERFAMILY Protein kinase-like (PK-like) 8 120 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0271 Vvi-Chr9 2647826 2651601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0271 128 444 Receptor kinase-like Gene Family AT1G51800 52.174 5.45e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0271 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0271 - - vvi:100253270 665.996