Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0269 ATGGCTAATGGAAACTTGCGAGAACATTTGTCAGGTGCAGGAAAGGACACTCCGGTCTTGAGTTGGGAACAAAGGCTTCAAATAGCAGTTGATGCAGCACAAGCATTTGAATATTTACATGAAGGTTGCAAACCACCAATAATCCACAGAGATGTTAAGACTTCCAACATTTTGTTGGATGGAAAATTGCAAGCAAAAGTGGCTGATTTTGGGCTGTCCAGATTCATGCCATCAGAGAGTAGAACTATTGTATCAACTCAAGTTGCTGGCACACCCGGCTACCTCGATCCTGAGTACTACATATCGAACAATCTGAATGAGAAAAGCGATGTTTACGCCTTTGGGATAGTCCTGTTGGAGCTGGTCACTGGCCACCCTGCAATCATACCAGGCCATGAGAACACACACTTAGTTGACTGGCTCAGTCCCAGGCTTGCAGGAGGGGAAATAAGAAGCATTGTAGACTCTAGGCTAAATGGAGATTTCAACCCCAACTCCGCCTGGAAACTTGTAGAGACAGCAATGGCATGTGTGCCCAGAAGCTCCATACAAAGGCCAACAATGAGTCAAGTGGTTGCGGACCTGAAGGAGTGTCTGCAGATGGAAATGCACCGCAACAAAAGTGCTTCACAGTCTAGAACATATCAAGATACAGCATCAAGTGCTAATTCCATTGATCTGTTTGCTGTTGAGCTCGACGTCTCAATGCCTCATGCAAGATAG 723 0.4564 MANGNLREHLSGAGKDTPVLSWEQRLQIAVDAAQAFEYLHEGCKPPIIHRDVKTSNILLDGKLQAKVADFGLSRFMPSESRTIVSTQVAGTPGYLDPEYYISNNLNEKSDVYAFGIVLLELVTGHPAIIPGHENTHLVDWLSPRLAGGEIRSIVDSRLNGDFNPNSAWKLVETAMACVPRSSIQRPTMSQVVADLKECLQMEMHRNKSASQSRTYQDTASSANSIDLFAVELDVSMPHAR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0269 240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Vvi9g0269 240 Gene3D Transferase(Phosphotransferase) domain 1 1 224 - -
Vvi9g0269 240 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 1 208 - -
Vvi9g0269 240 PIRSF ILK 1 215 - -
Vvi9g0269 240 PANTHER OS07G0107800 PROTEIN-RELATED 1 203 - -
Vvi9g0269 240 SMART serkin_6 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0269 240 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0269 240 SUPERFAMILY Protein kinase-like (PK-like) 1 195 IPR011009 -
Vvi9g0269 240 Pfam Protein tyrosine and serine/threonine kinase 1 195 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0269 Vvi-Chr9 2628293 2630417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0269 1 240 Receptor kinase-like Gene Family AT1G51800 56.790 2.38e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0269 PK_Tyr_Ser-Thr 1.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0269 - - vvi:100242932 296.589