Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0267 ATGGTGCTCGTTTATGAGCATATGGCTGAGGGGAACTTAAAAGAGTATTTATCAGGTAAAAAAGAAATTGTCTTGAGTTGGGAACAAAGGCTTCAAATAGCAATTGATGCAGCACAAGCACTGGAATATTTACATGATGCTTGCAATCCACCCATAATCCATAGAGATGTAAAACCTGAAAACATCTTATTGACCAAAAAATTTCAAGCCAAAGTTGCAGATTTTGGGTGGTCTAGAAGTTTGCCCTCTGAAGGTGGAAGCTATGTATCAACTGCAATTGTTGGCACACCGGGGTACATTGACCCCGAGTACAACAGAACCTCATTACCAAGTAAGAAAACCGATGTTTATAGCTTTGGGATTGTTTTATTGGAGGTTATTTCGGGTCAACCTGTAATCATAAAGATCACAAAAGAGAGCTCATGTAACATAGCAGATTGGGTTCGCCTAGTAACTGCAAAAGGTGATATAAAAATGATTGTAGATCCAAGGTTACAAGGAGAATTTGAAGCCAATTCTGCCTGGAGAGCTGTAGAGACAGCAATGTCTTGTGTGCTACTCAGCTCCACAGATAGGCCAACCATGAGTCATGTAGTAGTGGAATTAAAAGAATGTCTGAAAATAGCCATGGTCCATGAAAGAACTGACAATGCGGAAGAGGACCAGGGTCCTGTTAGTATTGAAGCTGTCCATGAAAGAACTGACAATGTGGAAGAGGATTGTGATCCTTTTGGTAGTGAAGCTGCCTATGAAAGAACTGATGATGCAGCAGAGGACCATGGCCCTCTTGGTGTTGAAGCTGCCCATGAAGTAACCAACAATGCCAAAGAGGACCAGGGTCCTGTTGGTATTGAAGCTCCACATGAAAGAAATGACAGTGGGAGAGAGGGCCATGGTTCTGTTGGTATTGGAGCTGCCCATAAAAGAAATGACAATGGGGAAGAGGACCAGTGTCCTGTTGGTATTGAAGCTGCCCATGAAAGACATGACGATGGGAAAGAGGACCATGGTCCTGATGGTATTGAAGCTGCCCATGAAATTACTGACAATGCAGAAGAGGACCAAGGTCTTGTTGGTATTGAAGCCACCCAAGAAAGAACTGACATTGTGGAAGAGAACCATGGTCCTGTTGGTATCGAAGCTGCCCATGAAAGAAATGACAATGATGAAGAGGACCATGGTCCTGTTGGTATTGAAGCTACCCATGAAAGAACTGATAATGTGGAAGAGAACCATGGTCCTCTTGGTAGCGAAGCTGCAATGGCTATCCAAGAAAGGACAAACTCATATGGGGCGGCCAAGGAAAAGAAGAAGGAGAAGAAGAAGAATGTTGTAGTTTCACCAGTTGCATCAATTACTTCAGTTGTTGTCCCATCAGACATTGTTGTCAAACCCAATGAGGATGATAAAACATTTGAGCCAAAGAACCAACACCTTACTTATTCTGAGATTGAAAGAATCACTGAAAATTTCCAAAAGGAGCTTGGAAAAGGAGCATCAGCAATAGTTTATCATGGTCATTTAAGTAATGGCACTGAAGTTGCGGTCAAGAAACTGTCACCTTCATCAATTCTAGGGTCAAAGCAATTCAAAACTGAGGCTCAGCTTTTGACAAGAGTTCATCATAAAAACTTGGTTTCTCTATTTGGATACTGTGATGAAGGTTCAAACATGGTGCTCATTTATGAGTACATGGCAAAGGGGAATTTAAAAGCATATTTATCAGGTAAAACAGAAGCTGCCCTGAGTTGGGAACAAAGACTTCGAATAGCAATTGATGCAGCACAAGCATTGGAATATTTACACAATGGTTGCAACCCACCCATAATCCATAGAGACGTCAAAACTGAAAACATTCTATTAAACGAAAAATTGCAAGCCAAAGTGGCAGATTTTGGGTGGTCTAAAAGTATGCCTGTGGAAGGTGGAAGCTATGTATCAACTGCAATTGTTGGCACACCTGGCTACCTTGACCCTGAATATCACAGAAACTCAGTGCCGAATGAGAAAACCGATGTTTATAGCTTTGGGATTGTTTTGTTGGAGCTTATTTCAAGTAGACCTGCAATCATAAAGATCACAGAAGACAATCGATGCAACATAACATATTGGGTCCGCCCCATTATTGCAAAAGGGGATATAAGAATGATTGTAGATCCAAGGTTACAAGGAAAATTTGAGACTAATTCTGCCAGGAGAGCAATAGAGACAGCAATGTCATGTGTGTCACTCAGCTCCACTGACAGGCCTACCATGAGTGACATAATAGTAGAATTAAGAGAATGCCTAAAGATAGTGATGACCCATGAAAGAACGAAAGAGGGCCATGCTTCTGTTGGTATTGAAGCTGCAATGACTGTTCAAGAAAGTTTCAATGGAAATCAGGATTTCCTTACGACAGGCTCGAATGCGAAGGCTGCGGAGAAAGAGAAGGAGAAGGACGAGAAGAAGAAGAAAAAGAAGAAAAAGAATTTTATTGGTCCAGCAGTCACATCAATTACTTCAGTTTTAGTCCCCTCTGGTGCATTAGCCAGCTTGGGAAAATCTAAAAAGAAATGGCCACATGCTAAAGATAAGAGTTACTCCGAGGTTGCAAGAATCACGAACAACTTCCAGCAGGTGATTGGATGTGGAGCATTTGCATCAGTTTACCTAGGTTATTTAAGCGATGGTACTGAGGTAGCTGTCAAGTTGCTTTCATCTTCAACTAGAGGATCCCAGGACCTTCAGACAGAGGCTCAGCTGCTGACAAGAATTCGACATAAAAACTTGGTTTCTCTGCATGGATACCATGATGAAGGTTCAATCATTGCGCTCATTTATGAATATATGGTGAAGGGGAGCTTAAGAAAGTATCTATCAGATGAAAATGAAGTTGTTTTGAGCTGGAAGCAAAGAATTGGAATAGCACTTGATGTAGCACAAGGACTGGAATATCTACATGATGGTTGCAGGCCACCCATAATCCACAGAGACGTTACATCTGCAAACATCTTATTGAATGAAAAATTGCAAGCCAAAGTGGCAGATATGGGGTTGTCTAGAAGTCTACCCATTGATGATTTGACTGATATTTCCACTGTGGTTGTTGGCACACCCGGGTACCTTGACCCTGAGTATTTTCAATCCAATAGGGTGTCTATGAAAAGCGATGTCTATAGCTTTGGGGTTGTTCTGCTGGAACTTGTTTCAGGCCAACCTGCACTGATAAAGAGCACCAACGGTATAACTGATCACCTAATCAATTGGGTTCGACCCCTGATTGATAGGAGGGAAATAAGAGGAATTGTGGATCCAAGGTTAAATGGAGACTTTGACATTAGTTCTGCCTGGAAGGCTGTAGAAACAGCAATGGCTTGTGTAAGATTCAGCTCCGTTGATAGGCCAACCATGAGTGACATAGCATACGAATTAAAAGGGTGTGTAAATTGTTTAGCAATAGCAACTGGGGATGTGGAAGAGGACCTTGGTTCTTTTATTATTGAGGATGCAATGCTTCACCAACCAAGCTAG 3513 0.4184 MVLVYEHMAEGNLKEYLSGKKEIVLSWEQRLQIAIDAAQALEYLHDACNPPIIHRDVKPENILLTKKFQAKVADFGWSRSLPSEGGSYVSTAIVGTPGYIDPEYNRTSLPSKKTDVYSFGIVLLEVISGQPVIIKITKESSCNIADWVRLVTAKGDIKMIVDPRLQGEFEANSAWRAVETAMSCVLLSSTDRPTMSHVVVELKECLKIAMVHERTDNAEEDQGPVSIEAVHERTDNVEEDCDPFGSEAAYERTDDAAEDHGPLGVEAAHEVTNNAKEDQGPVGIEAPHERNDSGREGHGSVGIGAAHKRNDNGEEDQCPVGIEAAHERHDDGKEDHGPDGIEAAHEITDNAEEDQGLVGIEATQERTDIVEENHGPVGIEAAHERNDNDEEDHGPVGIEATHERTDNVEENHGPLGSEAAMAIQERTNSYGAAKEKKKEKKKNVVVSPVASITSVVVPSDIVVKPNEDDKTFEPKNQHLTYSEIERITENFQKELGKGASAIVYHGHLSNGTEVAVKKLSPSSILGSKQFKTEAQLLTRVHHKNLVSLFGYCDEGSNMVLIYEYMAKGNLKAYLSGKTEAALSWEQRLRIAIDAAQALEYLHNGCNPPIIHRDVKTENILLNEKLQAKVADFGWSKSMPVEGGSYVSTAIVGTPGYLDPEYHRNSVPNEKTDVYSFGIVLLELISSRPAIIKITEDNRCNITYWVRPIIAKGDIRMIVDPRLQGKFETNSARRAIETAMSCVSLSSTDRPTMSDIIVELRECLKIVMTHERTKEGHASVGIEAAMTVQESFNGNQDFLTTGSNAKAAEKEKEKDEKKKKKKKKNFIGPAVTSITSVLVPSGALASLGKSKKKWPHAKDKSYSEVARITNNFQQVIGCGAFASVYLGYLSDGTEVAVKLLSSSTRGSQDLQTEAQLLTRIRHKNLVSLHGYHDEGSIIALIYEYMVKGSLRKYLSDENEVVLSWKQRIGIALDVAQGLEYLHDGCRPPIIHRDVTSANILLNEKLQAKVADMGLSRSLPIDDLTDISTVVVGTPGYLDPEYFQSNRVSMKSDVYSFGVVLLELVSGQPALIKSTNGITDHLINWVRPLIDRREIRGIVDPRLNGDFDISSAWKAVETAMACVRFSSVDRPTMSDIAYELKGCVNCLAIATGDVEEDLGSFIIEDAMLHQPS* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0267 1170 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 8 215 - -
Vvi9g0267 1170 ProSitePatterns Tyrosine protein kinases specific active-site signature. 988 1000 IPR008266 GO:0004672|GO:0006468
Vvi9g0267 1170 Coils Coil 804 824 - -
Vvi9g0267 1170 SUPERFAMILY Protein kinase-like (PK-like) 471 758 IPR011009 -
Vvi9g0267 1170 ProSiteProfiles Protein kinase domain profile. 489 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 Pfam Protein tyrosine and serine/threonine kinase 491 758 IPR001245 GO:0004672|GO:0006468
Vvi9g0267 1170 Pfam Protein tyrosine and serine/threonine kinase 871 1068 IPR001245 GO:0004672|GO:0006468
Vvi9g0267 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Vvi9g0267 1170 SUPERFAMILY Protein kinase-like (PK-like) 2 204 IPR011009 -
Vvi9g0267 1170 SUPERFAMILY Protein kinase-like (PK-like) 854 1137 IPR011009 -
Vvi9g0267 1170 Pfam Protein kinase domain 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 ProSitePatterns Protein kinases ATP-binding region signature. 875 897 IPR017441 GO:0005524
Vvi9g0267 1170 CDD STKc_IRAK 495 759 - -
Vvi9g0267 1170 FunFam Leucine-rich repeat receptor-like protein kinase 467 564 - -
Vvi9g0267 1170 MobiDBLite consensus disorder prediction 799 821 - -
Vvi9g0267 1170 MobiDBLite consensus disorder prediction 273 317 - -
Vvi9g0267 1170 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 565 772 - -
Vvi9g0267 1170 Gene3D Phosphorylase Kinase; domain 1 461 564 - -
Vvi9g0267 1170 Gene3D Phosphorylase Kinase; domain 1 844 943 - -
Vvi9g0267 1170 ProSitePatterns Protein kinases ATP-binding region signature. 495 518 IPR017441 GO:0005524
Vvi9g0267 1170 CDD STKc_IRAK 875 1140 - -
Vvi9g0267 1170 SMART serkin_6 869 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 SMART serkin_6 489 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 PANTHER OS07G0107800 PROTEIN-RELATED 412 767 - -
Vvi9g0267 1170 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 ProSiteProfiles Protein kinase domain profile. 869 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0267 1170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Vvi9g0267 1170 MobiDBLite consensus disorder prediction 282 296 - -
Vvi9g0267 1170 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 944 1149 - -
Vvi9g0267 1170 Gene3D Transferase(Phosphotransferase) domain 1 8 227 - -
Vvi9g0267 1170 Gene3D Transferase(Phosphotransferase) domain 1 565 784 - -
Vvi9g0267 1170 Gene3D Transferase(Phosphotransferase) domain 1 944 1152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0267 Vvi-Chr9 2596002 2602921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0267 440 763 Receptor kinase-like Gene Family AT1G51850 50.852 5.18e-105 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0267 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0267 - - vvi:100241278 2283.83