Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0260 ATGGAAATGCTACTTCGGGTTCTTAGTTTTCTAGCTCTTAATATGCTTCTTCATGTGCATGCTCAAACAGGATTCATAAGCATTGATTGTGGAGTGGATGAGGACTACATAGATAACACAACCAAACTATTTTACAGTTCGGATGCAAACTTCATAGACAGTGGAGAAAACAAGAACATCCCTTATGATTTCACGTCCACAATTTATGAAAAACAGCTCACAAATGTTCGAAGCTTCCCAAAAGGAGTCAAGAACTGCTACACCCTACCAGCAGACCAAGGCAAAGATAATAAGTACTTGATCAGAGCTGTATTCATGTGCGGTAATGTTCAAGAGTACAATAATCAGCTTCCAGAGTTCAAACTATATCTGGGTGTCGAAGAATGGGACTCAGTGACATTCAACTCGTCTTATAATATCGTCCGCAGGGAAATCATATATGTCCCTAAAACAGATGAAATATATGTGTGTCTTGTTAATACTGATTCTGGGACACCTTTCATTTCTGCATTAGAGCTCAGGCCAATTGATGATTCCATTTATAACAAAACTCAATCTGGATCGCTGGTGCTTTTTAACAGGTACAATTTTGGTTCAGAAACCAGTGAGACAGTCAGATATGGAGACGATGTGTTGGATCGCATATGGGGACCCTACAGTTGGTCTTCTGGGGAATCCATCAAAGCACCCTATAGTAGTTCTGGGTTAAGTGAAAATCAATTTAAACTTCCGGCCAAGGTAATGGAGACCGCGGTAAAACCTGTGAATGGAACTTCGTTGGACTTCTATTTGGATGGGATTGATTCATCTCAAGAATTTTACGTATATTTGCATGTTGCTGAGATTGAGACATTGGTGCAAGGCCAGATCAGAGAGTTTACCGTTTCAGTGAATAAGAAAGCAATTTCTAGTGCTATCCAACCTCGGTACATGATTGCAGATACTTATTTTACTCAATCTTCCTTAAGTGGAAGTGAGCTGAATTTTTCACTTTCCCAGACAAATCAATCCACACTTCCACCCATTATGAATGCTCTGGAGATTTACATGATAAAAGAATTCGTACAGTTGTCCACTGAACAACGTAATGTTGATGCTATGAAGAAAATCAAGTCAGTATACCAGATGACGAAGAGTAGTTGGCAAGGAGATCCATGTCTCCCAAGAAATTACTCATGGGATGGCCTGATCTGCAGTGACAATGGTTATAATGCCCCTAGTATCACCTCACTGAACCTATCATCTAGCAATTTGGCTGGGAAGATAGATAAATCATTCTCCAATCTCACTTCGTTACAATATTTGGATTTATCTTACAATAGTCTAAATGGAGAAGTACCAGAATTTCTATCTGAAATGTCTTCCTTGAAGACCCTGAACTTATCAGGGAATAAATTGACAGGTTCGGTTCCTTCGGCCCTCCTCGCAAAATCTAACGATGGAACACTGTCTTTAAGTTTGGATGGGAATCCGGATCTTTGTAAAACCAACTCGTGCAATACAAAGACGAAAAAGAAGAACTCGGTTGTTGTTCCTGTAGTTGCATCCATTGCTTCAGTTGTGGTCCTCTTAGGTGCAATATTTGCAGTCTATTGGCGCTTCATAGGAGGCGGAAGACGTGGTAAACCTGCTGGAGTGAAACCCAATGATCGAGATAATGTGTCACAATTGGAGTTCCAGAAACCAGATGTACCTAATGAAGAAGAGAACTGGGACTCGGAGTTAGAAGAAATACAAAAGGAAGTGATCGAAACTAATGGAAAGCTGGAGGCAAGGAAGCAACGTCTTAGTTATTCTGAGGTTAAAAGGATCACTAACAACTTTGGAGAGGTGATCGGAAAGGGAGGATCTGGATTGGTTTACAATGGCCGTTTAAGCAATGGCATTAAAGTTGCGGTCAAGAAGCTGTCACCTTCTTTGAATCTAGCTTTTGAGCAATTTCAGAATGAGGCAAGGTACTGCGACGAGGGTTCGAACATGTTGCTAATTTATGAGTATATGGCTAATGGGAACTTGAAAGAACATATATCAGGTAAAAATGGGTCGGTGTTGAGTTGGGAACAAAGAGTTCAAATAGCAATTGAGGCAGCACAAGCACTGGAATATTTACATGATGGTTGCAATCCATCCATAATTCACAGAGATGTTAAGGCTGCCAACATCTTATTGAATGAAAAAATGCAAGCCAAAGTAGCAGATTTTGGGTGGTCCAGAAGCATGCCCTCTGAAAGTCAATCTCATGTATCAGCTACCTTTGTTGTCGGCACTTCTGGGTACCTTGACCCTGAGTACAACAAAACTGGAAAGTTGACTAAGGAAAGTGATGTTTATAGCTTTGGGATTGTTCTTCTAGAGCTTATTTCCGGCCGGTCTGCGAAAATTGAGGACAATCTCAGCATATTGGATTGGTTCTATCCTGTTTTTGAAAGTGGGAAATTAGAAGACATTGTGGATCCAAGGTTACAAGGAATCTTCAGTACTAACTCAGCCTGGAGAGCTGTAGAGACAGCAAACTCTTGCATACCACTCAGATCCATAGAGAGGCAAACTATGAGCTATGTAGTGAATGAATTGAAAGAGTGCCTGAAACTGCTAGAGATGAGTAGCCCTTCAAATACAGGAGTAACCATTACTCGACCTATTGGAACTGAAACCGGCCCTCAAGCAAGGTAG 2673 0.4085 MEMLLRVLSFLALNMLLHVHAQTGFISIDCGVDEDYIDNTTKLFYSSDANFIDSGENKNIPYDFTSTIYEKQLTNVRSFPKGVKNCYTLPADQGKDNKYLIRAVFMCGNVQEYNNQLPEFKLYLGVEEWDSVTFNSSYNIVRREIIYVPKTDEIYVCLVNTDSGTPFISALELRPIDDSIYNKTQSGSLVLFNRYNFGSETSETVRYGDDVLDRIWGPYSWSSGESIKAPYSSSGLSENQFKLPAKVMETAVKPVNGTSLDFYLDGIDSSQEFYVYLHVAEIETLVQGQIREFTVSVNKKAISSAIQPRYMIADTYFTQSSLSGSELNFSLSQTNQSTLPPIMNALEIYMIKEFVQLSTEQRNVDAMKKIKSVYQMTKSSWQGDPCLPRNYSWDGLICSDNGYNAPSITSLNLSSSNLAGKIDKSFSNLTSLQYLDLSYNSLNGEVPEFLSEMSSLKTLNLSGNKLTGSVPSALLAKSNDGTLSLSLDGNPDLCKTNSCNTKTKKKNSVVVPVVASIASVVVLLGAIFAVYWRFIGGGRRGKPAGVKPNDRDNVSQLEFQKPDVPNEEENWDSELEEIQKEVIETNGKLEARKQRLSYSEVKRITNNFGEVIGKGGSGLVYNGRLSNGIKVAVKKLSPSLNLAFEQFQNEARYCDEGSNMLLIYEYMANGNLKEHISGKNGSVLSWEQRVQIAIEAAQALEYLHDGCNPSIIHRDVKAANILLNEKMQAKVADFGWSRSMPSESQSHVSATFVVGTSGYLDPEYNKTGKLTKESDVYSFGIVLLELISGRSAKIEDNLSILDWFYPVFESGKLEDIVDPRLQGIFSTNSAWRAVETANSCIPLRSIERQTMSYVVNELKECLKLLEMSSPSNTGVTITRPIGTETGPQAR* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0260 890 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 667 870 - -
Vvi9g0260 890 Pfam Protein tyrosine and serine/threonine kinase 608 791 IPR001245 GO:0004672|GO:0006468
Vvi9g0260 890 ProSiteProfiles Protein kinase domain profile. 606 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0260 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Vvi9g0260 890 PRINTS Leucine-rich repeat signature 453 466 - -
Vvi9g0260 890 PRINTS Leucine-rich repeat signature 432 445 - -
Vvi9g0260 890 SUPERFAMILY Protein kinase-like (PK-like) 594 858 IPR011009 -
Vvi9g0260 890 FunFam Leucine-rich repeat receptor-like kinase 362 496 - -
Vvi9g0260 890 SMART serkin_6 606 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0260 890 Gene3D Phosphorylase Kinase; domain 1 579 666 - -
Vvi9g0260 890 PANTHER OS07G0107800 PROTEIN-RELATED 26 862 - -
Vvi9g0260 890 Coils Coil 575 595 - -
Vvi9g0260 890 Pfam Malectin-like domain 28 350 IPR024788 -
Vvi9g0260 890 ProSitePatterns Protein kinases ATP-binding region signature. 612 635 IPR017441 GO:0005524
Vvi9g0260 890 Gene3D Transferase(Phosphotransferase) domain 1 667 873 - -
Vvi9g0260 890 SUPERFAMILY L domain-like 379 474 - -
Vvi9g0260 890 Gene3D Ribonuclease Inhibitor 363 494 IPR032675 -
Vvi9g0260 890 Pfam Leucine rich repeat 406 466 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0260 Vvi-Chr9 2542794 2549085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0260 1 890 Receptor kinase-like Gene Family AT2G19210 42.625 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi9g0260 Malectin_like 6e-103 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0260 - - vri:117922755 1662.51