Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi9g0259 ATGGATTCAAAATATTGTGTAGGATTCATAAGCATTGATTGTGGGATAGCTGAGGGCTCAGACTATAAGGATAATACCACTGGCCTGCTTTACACTTCGGATGCAAAATTCATAGACACTGGAATAAATGGGAAGATTTCTTCAAAGTTCACGTCTGCAACTCTTATACCACAGCTCACAAATGTTAGAAGCTTCCCAGAAGGAGCCAAGAATTGTTACACCCTGAGACCGAAAAATGGCAAAAATAATAATTATTTGATCAGGGCTTTCTTCATGTATGGAAATTATGACTCCAAGGATCAACCTCCAGAATTCAAACTACATCTTGGTGTTGAGGAGTGGGACACAGTTAACATTACCCATTCAGATAAAATTGTCAGGAGGGAAATCATTCATGTTCCAAAGACAGATGACATATATGTCTGTCTGGCAAACACTGGGTCTGGGACACCTTTTATATCTGCGTTAGAGCTGAGACCACTGGATAATTCCACTTATACCACCGAATCTGGATCACTGGAACTCTTTACAAGGGTTGACGTTGGATCAACAACAAATGAAACAGTCAGATACAAAGACGATGTTTTTGATCGCATTTGGGATCCCGTCAGCTGGGATTATTGGGCTCCCATCAATTCAAGATATGTTAGTGGCACCTTAAGTAACAATGAGTACAAACCTCCATCCAATGTCATGTCTACTGCTGTGATTCCAGGCCTCGATTCCCTTTCCTTGGAGTTTTATTGGGATACAGATGATCCTAGTCAACAGTTTTATGTGTACATGTACTTCGCTGAGGTTGAGCAACTGGAAGCCGGCGAGTTGAGAGAATTCAAGATCTCACTGAATGGTGGCTCATGGAGAGGGCCTATTGTTCCAGAAAAGATGATTCCAACTACTATATGGAACACCGACTCTATAAGTGCTCCTGGTAGTCTAAATTTTAGTATTTCTAAGACAGATAACTCCACACGTCCTCCCATTCTCAATGCTTTGGAGATATATTCGGTAAAACACTTCTTACAATCACCAACTGGCCAAAATGAAGTTGATGCTATCAAGAAAATCAAGTCAGTGTACAAGGTGATGAAGAGTAGCTGGCAAGGAGATCCATGCATCCCCAGAGATTACTTATGGGATGGCCTGACCTGCAGTGACAATGGCTATGATGCTCCCAGTATCATCTCACTGAACCTTTCTTCGAGCAATTTGACCGGGAGGATCGATGGTTCATTCTCTAATCTCACGTCATTACAACATTTGAATTTATCATGGAACAATTTCATAGGTTCAGTTCCATTGGCGCTAATAAAACAAGCTGATGGTGGTACCTTGTCTTTGAGTTTGGATGGGAATCCGCATCTTTGTAAAACAAGCTCATGTAAGTGGAAGAATCCTATTGTTCCAATAGTTTCATGCGCCGTTTTCGTTCTGGTCCTCTTAGGTGTATTTGCCATCTTCTGGATCTACAAAAGGAAGCAACGACAAGAAGAGAAGATAATGAGGCAGAATAACAGGAACGTTAGTTACTCTGAGATTGTAAGCATCACTGGTAACTTCCAACAGGTGATTGGGAAAGGAGGGTTTGGAAAAGTTTATAGTGGCCATTTAAGTGATGGTACTCAAGTTGCTGTCAAGATGCTTTCATCTCCATCAATCCATGGGTCTAAGCAATGTAGGACTGAGGCAAGCTTCTTTATATATATATCTATAAACTTGGTTTCTCTACTCGGTTACTGTGATGAGAGTCCAAACATGGGGCTCATGTACGAGTACATGGCTAATGGGAATTTACAAGAGTGTTTGTCAGGATGCATCCCACTGGAATATTTGCACAATGGTTGCAAGCCACCAATAATCCACAGAGATGTTAAGACTGCCAACATTTTGTTGGATGAGAAATTGCAAGCCAAAGTAGCAGATTTTGGGTTGTCCAGATGCTTGACCCCTGAAAATGGGAATTGTTTATCTGGGAGTAATTTTTCAACTGCAATATCTGGAACGCCTGGATACCTCGATCCTGAGTATTACACATCCTTAAGGTTGGATGAGAAAAGCGATGTTTATAGCTTTGGGATTGTTCTGTTGGAGCTTATCACTGGCCAGCCTCCGATAATAAAGCAGGGCGAAGAAAGCATGCTTCACATAGTCCAATGGGTCAGTCCCATTATTAAAAGGGGGGAGATTAGAGACATAGTAGATCAGAGGTTACAGGGAGATTTTGATATCAGTTCTGTCGGGAAAGCTATAGATATAGCAATGGCTTGTGTAACCTACAGCTCCACCACAAGGCCGACCATGAGTCATGTGTTGCTGGAATTAAAAGGCTGTTTGAACATTGAGATAGCCCCTGAAAGGACGCGGAGTATGGAGGAAGACAATGAGAAACAAGCAAACGATTCGCTTGAAATGATTTTTGTTAGCACAGAAATTCCAAAGGGTCCTCAGGAAAGGTAG 2457 0.4172 MDSKYCVGFISIDCGIAEGSDYKDNTTGLLYTSDAKFIDTGINGKISSKFTSATLIPQLTNVRSFPEGAKNCYTLRPKNGKNNNYLIRAFFMYGNYDSKDQPPEFKLHLGVEEWDTVNITHSDKIVRREIIHVPKTDDIYVCLANTGSGTPFISALELRPLDNSTYTTESGSLELFTRVDVGSTTNETVRYKDDVFDRIWDPVSWDYWAPINSRYVSGTLSNNEYKPPSNVMSTAVIPGLDSLSLEFYWDTDDPSQQFYVYMYFAEVEQLEAGELREFKISLNGGSWRGPIVPEKMIPTTIWNTDSISAPGSLNFSISKTDNSTRPPILNALEIYSVKHFLQSPTGQNEVDAIKKIKSVYKVMKSSWQGDPCIPRDYLWDGLTCSDNGYDAPSIISLNLSSSNLTGRIDGSFSNLTSLQHLNLSWNNFIGSVPLALIKQADGGTLSLSLDGNPHLCKTSSCKWKNPIVPIVSCAVFVLVLLGVFAIFWIYKRKQRQEEKIMRQNNRNVSYSEIVSITGNFQQVIGKGGFGKVYSGHLSDGTQVAVKMLSSPSIHGSKQCRTEASFFIYISINLVSLLGYCDESPNMGLMYEYMANGNLQECLSGCIPLEYLHNGCKPPIIHRDVKTANILLDEKLQAKVADFGLSRCLTPENGNCLSGSNFSTAISGTPGYLDPEYYTSLRLDEKSDVYSFGIVLLELITGQPPIIKQGEESMLHIVQWVSPIIKRGEIRDIVDQRLQGDFDISSVGKAIDIAMACVTYSSTTRPTMSHVLLELKGCLNIEIAPERTRSMEEDNEKQANDSLEMIFVSTEIPKGPQER* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi9g0259 818 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Vvi9g0259 818 SUPERFAMILY Protein kinase-like (PK-like) 499 774 IPR011009 -
Vvi9g0259 818 Gene3D Ribonuclease Inhibitor 350 456 IPR032675 -
Vvi9g0259 818 ProSiteProfiles Protein kinase domain profile. 518 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0259 818 Gene3D Phosphorylase Kinase; domain 1 489 592 - -
Vvi9g0259 818 SMART serkin_6 518 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi9g0259 818 SUPERFAMILY L domain-like 370 437 - -
Vvi9g0259 818 Pfam Malectin-like domain 12 337 IPR024788 -
Vvi9g0259 818 PANTHER OS07G0107800 PROTEIN-RELATED 10 783 - -
Vvi9g0259 818 Gene3D Transferase(Phosphotransferase) domain 1 593 802 - -
Vvi9g0259 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vvi9g0259 818 Pfam Protein kinase domain 521 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi9g0259 Vvi-Chr9 2533701 2539061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi9g0259 8 775 Receptor kinase-like Gene Family AT2G19210 44.377 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vvi9g0259 Malectin_like 2e-114 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi9g0259 - - vri:117922407 1397.49